Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN54_RS06070 Genome accession   NZ_LS483417
Coordinates   1145524..1146333 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140524..1151333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS06050 (NCTC11902_01155) - 1142990..1143976 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  DQN54_RS06055 (NCTC11902_01156) - 1144236..1144888 (-) 653 Protein_1149 potassium channel family protein -
  DQN54_RS06060 (NCTC11902_01157) - 1144935..1145189 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  DQN54_RS06065 (NCTC11902_01158) relB 1145191..1145433 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  DQN54_RS06070 (NCTC11902_01159) vicX 1145524..1146333 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  DQN54_RS06075 (NCTC11902_01160) micB 1146335..1147684 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN54_RS06080 (NCTC11902_01161) micA 1147677..1148381 (-) 705 WP_000722076.1 response regulator YycF Regulator
  DQN54_RS06085 (NCTC11902_01162) mutY 1148436..1149611 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=1140872 DQN54_RS06070 WP_001289493.1 1145524..1146333(-) (vicX) [Streptococcus pneumoniae strain NCTC11902]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1140872 DQN54_RS06070 WP_001289493.1 1145524..1146333(-) (vicX) [Streptococcus pneumoniae strain NCTC11902]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTCTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGTTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment