Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQN54_RS02645 Genome accession   NZ_LS483417
Coordinates   481393..482124 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 476393..487124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS02620 (NCTC11902_00486) dnaK 476519..478342 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  DQN54_RS02625 (NCTC11902_00487) - 478344..478700 (+) 357 WP_000114432.1 hypothetical protein -
  DQN54_RS02630 (NCTC11902_00488) dnaJ 479102..480238 (+) 1137 WP_001066294.1 molecular chaperone DnaJ -
  DQN54_RS02635 (NCTC11902_00489) - 480618..480905 (-) 288 WP_000777761.1 hypothetical protein -
  DQN54_RS02640 (NCTC11902_00490) - 480915..481325 (-) 411 WP_001112361.1 HIT family protein -
  DQN54_RS02645 (NCTC11902_00491) pptA 481393..482124 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DQN54_RS02650 (NCTC11902_00492) - 482121..483170 (+) 1050 WP_000653767.1 ABC transporter permease -
  DQN54_RS02655 (NCTC11902_00493) - 483338..483667 (-) 330 WP_000132572.1 hypothetical protein -
  DQN54_RS02660 (NCTC11902_00494) - 483944..484282 (+) 339 WP_000682135.1 LytTR family DNA-binding domain-containing protein -
  DQN54_RS02665 (NCTC11902_00495) comE/blpR 484287..485024 (+) 738 WP_001219122.1 response regulator transcription factor Regulator
  DQN54_RS02670 (NCTC11902_00496) - 485038..486378 (+) 1341 WP_001017626.1 sensor histidine kinase -
  DQN54_RS02675 (NCTC11902_00497) blpC 486420..486575 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1140858 DQN54_RS02645 WP_000889923.1 481393..482124(+) (pptA) [Streptococcus pneumoniae strain NCTC11902]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1140858 DQN54_RS02645 WP_000889923.1 481393..482124(+) (pptA) [Streptococcus pneumoniae strain NCTC11902]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment