Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DQN54_RS02015 Genome accession   NZ_LS483417
Coordinates   363969..364658 (+) Length   229 a.a.
NCBI ID   WP_000518011.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 358969..369658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS01990 (NCTC11902_00370) gpsB 359078..359407 (+) 330 WP_000146522.1 cell division regulator GpsB -
  DQN54_RS02000 (NCTC11902_00372) - 359893..361050 (+) 1158 WP_000711391.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  DQN54_RS02005 (NCTC11902_00373) mapZ 361063..362457 (+) 1395 WP_000039255.1 cell division site-positioning protein MapZ -
  DQN54_RS02010 (NCTC11902_00374) gndA 362533..363957 (+) 1425 WP_000158781.1 NADP-dependent phosphogluconate dehydrogenase -
  DQN54_RS02015 (NCTC11902_00375) covR 363969..364658 (+) 690 WP_000518011.1 response regulator transcription factor Regulator
  DQN54_RS02020 (NCTC11902_00376) cbpC 364756..365778 (+) 1023 WP_000771113.1 choline-binding protein CbpC -
  DQN54_RS02025 (NCTC11902_00377) cbpJ 365796..366794 (+) 999 WP_000698048.1 choline-binding protein CbpJ -
  DQN54_RS02030 (NCTC11902_00378) - 366912..368144 (-) 1233 WP_000765692.1 MFS transporter -
  DQN54_RS02035 (NCTC11902_00379) - 368187..368774 (-) 588 WP_016397727.1 lanthionine synthetase LanC family protein -
  DQN54_RS02040 - 368674..369063 (-) 390 WP_016397728.1 lanthionine synthetase LanC family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26880.19 Da        Isoelectric Point: 6.9836

>NTDB_id=1140856 DQN54_RS02015 WP_000518011.1 363969..364658(+) (covR) [Streptococcus pneumoniae strain NCTC11902]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1140856 DQN54_RS02015 WP_000518011.1 363969..364658(+) (covR) [Streptococcus pneumoniae strain NCTC11902]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGCCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCCTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCGATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACACGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGACAAA
AAAGCTACATTAAAACTGTGCGTGGTGTTGGATATACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.522

100

0.467

Multiple sequence alignment