Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQN44_RS01455 Genome accession   NZ_LS483414
Coordinates   267423..268925 (+) Length   500 a.a.
NCBI ID   WP_030127657.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13736     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262423..273925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN44_RS01440 (NCTC13736_00285) - 262476..263657 (-) 1182 WP_002992220.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQN44_RS01445 (NCTC13736_00286) pbp3 263825..265057 (-) 1233 WP_030127655.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQN44_RS01450 (NCTC13736_00287) amiA 265388..267358 (+) 1971 WP_030127656.1 peptide ABC transporter substrate-binding protein Regulator
  DQN44_RS01455 (NCTC13736_00288) amiC 267423..268925 (+) 1503 WP_030127657.1 ABC transporter permease Regulator
  DQN44_RS01460 (NCTC13736_00289) amiD 268925..269851 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  DQN44_RS01465 (NCTC13736_00290) amiE 269860..270930 (+) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  DQN44_RS01470 (NCTC13736_00291) amiF 270923..271846 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQN44_RS10210 - 271831..271968 (-) 138 Protein_236 IS3 family transposase -
  DQN44_RS09955 - 271995..272174 (-) 180 WP_100215900.1 transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56133.52 Da        Isoelectric Point: 10.2222

>NTDB_id=1140746 DQN44_RS01455 WP_030127657.1 267423..268925(+) (amiC) [Streptococcus pyogenes strain NCTC13736]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPISKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMAGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1140746 DQN44_RS01455 WP_030127657.1 267423..268925(+) (amiC) [Streptococcus pyogenes strain NCTC13736]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCATTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGCTGGTTTACC
AGATAGTTTCCCAATGCTAGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGTGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.6

100

0.596
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.592
  amiC Streptococcus thermophilus LMG 18311

59.2

100

0.592

Multiple sequence alignment