Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   DQN40_RS10125 Genome accession   NZ_LS483413
Coordinates   1997193..1998245 (-) Length   350 a.a.
NCBI ID   WP_012767556.1    Uniprot ID   A0A9X8T4H4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1974333..1998245 1997193..1998245 within 0


Gene organization within MGE regions


Location: 1974333..1998245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS10000 (NCTC7136_02073) - 1975506..1976013 (-) 508 Protein_1910 MFS transporter -
  DQN40_RS10005 (NCTC7136_02075) - 1976634..1977779 (-) 1146 WP_084916700.1 restriction endonuclease subunit S -
  DQN40_RS10010 (NCTC7136_02076) - 1977800..1979845 (-) 2046 WP_084916698.1 N-6 DNA methylase -
  DQN40_RS10015 (NCTC7136_02077) - 1979970..1981136 (-) 1167 WP_084916697.1 hypothetical protein -
  DQN40_RS10020 (NCTC7136_02078) - 1981418..1981867 (+) 450 WP_084916695.1 helix-turn-helix transcriptional regulator -
  DQN40_RS10025 (NCTC7136_02079) - 1982050..1982370 (+) 321 WP_024401962.1 hypothetical protein -
  DQN40_RS10030 (NCTC7136_02080) - 1982370..1983455 (+) 1086 WP_111679425.1 DUF87 domain-containing protein -
  DQN40_RS10035 (NCTC7136_02081) - 1983455..1984066 (+) 612 WP_084916692.1 hypothetical protein -
  DQN40_RS10040 (NCTC7136_02082) - 1984201..1984797 (+) 597 WP_084916690.1 replication protein -
  DQN40_RS10045 (NCTC7136_02083) - 1984790..1985044 (+) 255 WP_084916689.1 DUF3173 family protein -
  DQN40_RS10050 - 1985041..1986179 (+) 1139 Protein_1920 site-specific integrase -
  DQN40_RS10055 (NCTC7136_02087) - 1986258..1986557 (+) 300 WP_002988205.1 YbaB/EbfC family nucleoid-associated protein -
  DQN40_RS10060 (NCTC7136_02088) - 1986614..1987351 (-) 738 WP_084916687.1 MerR family transcriptional regulator -
  DQN40_RS10065 (NCTC7136_02089) - 1987504..1988091 (-) 588 WP_014612583.1 3'-5' exonuclease -
  DQN40_RS10070 (NCTC7136_02090) - 1988139..1988669 (-) 531 WP_002992269.1 DUF536 domain-containing protein -
  DQN40_RS10075 - 1988966..1989277 (+) 312 Protein_1925 transposase -
  DQN40_RS10080 (NCTC7136_02091) - 1989328..1990503 (+) 1176 WP_014612585.1 NAD(P)/FAD-dependent oxidoreductase -
  DQN40_RS10085 (NCTC7136_02092) - 1990563..1990811 (-) 249 WP_042357993.1 hypothetical protein -
  DQN40_RS10090 (NCTC7136_02093) rpsN 1991159..1991428 (+) 270 WP_003052772.1 30S ribosomal protein S14 -
  DQN40_RS10095 (NCTC7136_02094) tsaD 1991758..1992774 (-) 1017 WP_084916686.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DQN40_RS10100 (NCTC7136_02095) rimI 1992764..1993189 (-) 426 WP_003056684.1 ribosomal protein S18-alanine N-acetyltransferase -
  DQN40_RS10105 (NCTC7136_02096) tsaB 1993191..1993889 (-) 699 WP_065358518.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  DQN40_RS10110 (NCTC7136_02097) - 1994175..1994405 (+) 231 WP_003056704.1 DNA-dependent RNA polymerase subunit epsilon -
  DQN40_RS10115 (NCTC7136_02098) rnjA 1994407..1996089 (+) 1683 WP_003056700.1 ribonuclease J1 -
  DQN40_RS10120 (NCTC7136_02099) amiF 1996268..1997200 (-) 933 WP_003060110.1 ATP-binding cassette domain-containing protein Regulator
  DQN40_RS10125 (NCTC7136_02100) oppD 1997193..1998245 (-) 1053 WP_012767556.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38667.36 Da        Isoelectric Point: 5.8490

>NTDB_id=1140724 DQN40_RS10125 WP_012767556.1 1997193..1998245(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MTNETILSVKNLHVDFKTYAGDVKAIRDISFDLKKGETLAIVGESGSGKSVTTRTLMGLNAKNANLSGEIDFKGKKLNAL
KEEEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENISKQKALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILKLMKEIQQQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHVEAPPMFKVSDTHYAATWLL
DERAPKVTPPVQIQKRWAKWQKREGGKLNE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1140724 DQN40_RS10125 WP_012767556.1 1997193..1998245(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGACAAACGAAACCATTTTAAGTGTTAAAAACCTCCACGTTGATTTCAAAACCTATGCAGGGGATGTGAAAGCTATTCG
CGATATTAGTTTTGACCTCAAAAAAGGAGAAACGCTTGCGATTGTTGGGGAATCTGGATCAGGAAAATCAGTGACCACTA
GGACCTTGATGGGCTTAAATGCTAAAAATGCTAACCTTTCTGGGGAAATTGATTTTAAAGGAAAAAAACTCAATGCCCTT
AAGGAAGAAGAATGGGTTAAGGTACGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTCGATCCAAC
GATGAAAATCGGAATGCAAATTGCTGAAGCTATTTTGATTCATGAGAATATCAGTAAGCAAAAAGCCTTGAGTCGTGCTC
TTGAATTGATGCATCAAGTAGGTATTCCAAATGCTGAAGAGCATATTAATGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAGCGTGCTGTGATTGCTATCGCTCTCGCAGCTAATCCAGAAATCCTGATTGCTGATGAACCGACCACAGCACTTGA
TGTTACCATTCAGGCACAAATCTTGAAATTAATGAAAGAAATCCAACAACAGACGGAATCATCTATTATTTTCATTACCC
ATGACCTTGGAGTTGTGGCTGGTATGGCTGACCGTGTCGCGGTAATGTATGCTGGAAAAATTGTTGAGTATGGAACGGTG
GATGAAGTCTTTTATAACCCGCAACACCCTTATACATGGGGCTTGCTTAATTCTATGCCAACCACAGATACCGCCTCAGG
GAGTTTAGAATCTATTCCAGGAACGCCGCCTGACTTGCTTAATCCTCCTAAGGGAGATGCTTTTGCAGCCCGCAATGAAT
TTGCCTTGGATATTGATCATGTGGAGGCTCCGCCGATGTTTAAGGTCAGCGACACCCATTATGCGGCAACTTGGTTATTA
GATGAGCGAGCGCCCAAAGTCACTCCGCCAGTTCAAATTCAAAAACGATGGGCAAAATGGCAAAAACGAGAAGGAGGCAA
GCTAAATGAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.429

100

0.794
  amiE Streptococcus salivarius strain HSISS4

55.394

98

0.543
  amiE Streptococcus thermophilus LMG 18311

56.325

94.857

0.534
  amiE Streptococcus thermophilus LMD-9

56.325

94.857

0.534

Multiple sequence alignment