Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQN40_RS10120 Genome accession   NZ_LS483413
Coordinates   1996268..1997200 (-) Length   310 a.a.
NCBI ID   WP_003060110.1    Uniprot ID   A0A9X8T5Q4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1974333..1998245 1996268..1997200 within 0


Gene organization within MGE regions


Location: 1974333..1998245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS10000 (NCTC7136_02073) - 1975506..1976013 (-) 508 Protein_1910 MFS transporter -
  DQN40_RS10005 (NCTC7136_02075) - 1976634..1977779 (-) 1146 WP_084916700.1 restriction endonuclease subunit S -
  DQN40_RS10010 (NCTC7136_02076) - 1977800..1979845 (-) 2046 WP_084916698.1 N-6 DNA methylase -
  DQN40_RS10015 (NCTC7136_02077) - 1979970..1981136 (-) 1167 WP_084916697.1 hypothetical protein -
  DQN40_RS10020 (NCTC7136_02078) - 1981418..1981867 (+) 450 WP_084916695.1 helix-turn-helix transcriptional regulator -
  DQN40_RS10025 (NCTC7136_02079) - 1982050..1982370 (+) 321 WP_024401962.1 hypothetical protein -
  DQN40_RS10030 (NCTC7136_02080) - 1982370..1983455 (+) 1086 WP_111679425.1 DUF87 domain-containing protein -
  DQN40_RS10035 (NCTC7136_02081) - 1983455..1984066 (+) 612 WP_084916692.1 hypothetical protein -
  DQN40_RS10040 (NCTC7136_02082) - 1984201..1984797 (+) 597 WP_084916690.1 replication protein -
  DQN40_RS10045 (NCTC7136_02083) - 1984790..1985044 (+) 255 WP_084916689.1 DUF3173 family protein -
  DQN40_RS10050 - 1985041..1986179 (+) 1139 Protein_1920 site-specific integrase -
  DQN40_RS10055 (NCTC7136_02087) - 1986258..1986557 (+) 300 WP_002988205.1 YbaB/EbfC family nucleoid-associated protein -
  DQN40_RS10060 (NCTC7136_02088) - 1986614..1987351 (-) 738 WP_084916687.1 MerR family transcriptional regulator -
  DQN40_RS10065 (NCTC7136_02089) - 1987504..1988091 (-) 588 WP_014612583.1 3'-5' exonuclease -
  DQN40_RS10070 (NCTC7136_02090) - 1988139..1988669 (-) 531 WP_002992269.1 DUF536 domain-containing protein -
  DQN40_RS10075 - 1988966..1989277 (+) 312 Protein_1925 transposase -
  DQN40_RS10080 (NCTC7136_02091) - 1989328..1990503 (+) 1176 WP_014612585.1 NAD(P)/FAD-dependent oxidoreductase -
  DQN40_RS10085 (NCTC7136_02092) - 1990563..1990811 (-) 249 WP_042357993.1 hypothetical protein -
  DQN40_RS10090 (NCTC7136_02093) rpsN 1991159..1991428 (+) 270 WP_003052772.1 30S ribosomal protein S14 -
  DQN40_RS10095 (NCTC7136_02094) tsaD 1991758..1992774 (-) 1017 WP_084916686.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DQN40_RS10100 (NCTC7136_02095) rimI 1992764..1993189 (-) 426 WP_003056684.1 ribosomal protein S18-alanine N-acetyltransferase -
  DQN40_RS10105 (NCTC7136_02096) tsaB 1993191..1993889 (-) 699 WP_065358518.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  DQN40_RS10110 (NCTC7136_02097) - 1994175..1994405 (+) 231 WP_003056704.1 DNA-dependent RNA polymerase subunit epsilon -
  DQN40_RS10115 (NCTC7136_02098) rnjA 1994407..1996089 (+) 1683 WP_003056700.1 ribonuclease J1 -
  DQN40_RS10120 (NCTC7136_02099) amiF 1996268..1997200 (-) 933 WP_003060110.1 ATP-binding cassette domain-containing protein Regulator
  DQN40_RS10125 (NCTC7136_02100) oppD 1997193..1998245 (-) 1053 WP_012767556.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35203.02 Da        Isoelectric Point: 6.6437

>NTDB_id=1140723 DQN40_RS10120 WP_003060110.1 1996268..1997200(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide


Download         Length: 933 bp        

>NTDB_id=1140723 DQN40_RS10120 WP_003060110.1 1996268..1997200(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTCACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTAGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAACCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTATATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACGCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.098

98.387

0.532
  amiF Streptococcus thermophilus LMG 18311

53.77

98.387

0.529
  amiF Streptococcus salivarius strain HSISS4

53.443

98.387

0.526

Multiple sequence alignment