Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DQN40_RS07930 Genome accession   NZ_LS483413
Coordinates   1572215..1573444 (-) Length   409 a.a.
NCBI ID   WP_022554539.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567215..1578444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN40_RS07905 - 1567446..1567664 (-) 219 Protein_1487 IS30 family transposase -
  DQN40_RS07910 - 1567658..1568065 (+) 408 Protein_1488 IS30 family transposase -
  DQN40_RS07915 (NCTC7136_01644) clpC 1568563..1570662 (+) 2100 WP_084916912.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DQN40_RS07920 (NCTC7136_01645) - 1570719..1571462 (-) 744 WP_065358637.1 hypothetical protein -
  DQN40_RS07925 (NCTC7136_01646) yihA 1571606..1572205 (-) 600 WP_003061604.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DQN40_RS07930 (NCTC7136_01647) clpX 1572215..1573444 (-) 1230 WP_022554539.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DQN40_RS07935 (NCTC7136_01648) - 1573558..1573728 (-) 171 WP_003054200.1 hypothetical protein -
  DQN40_RS07940 (NCTC7136_01649) - 1573748..1574245 (-) 498 WP_084916910.1 dihydrofolate reductase -
  DQN40_RS07945 (NCTC7136_01650) - 1574326..1575165 (-) 840 WP_003054196.1 thymidylate synthase -
  DQN40_RS07950 (NCTC7136_01651) - 1575384..1576565 (+) 1182 WP_003062183.1 hydroxymethylglutaryl-CoA synthase -
  DQN40_RS07955 (NCTC7136_01652) - 1576546..1577823 (+) 1278 WP_037589871.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45034.46 Da        Isoelectric Point: 4.5866

>NTDB_id=1140715 DQN40_RS07930 WP_022554539.1 1572215..1573444(-) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEISSEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1140715 DQN40_RS07930 WP_022554539.1 1572215..1573444(-) (clpX) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC7136]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTTATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTAGTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.242

100

0.892
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577

Multiple sequence alignment