Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   DQN67_RS11730 Genome accession   NZ_LS483410
Coordinates   2595895..2596599 (+) Length   234 a.a.
NCBI ID   WP_370696083.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11404     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590895..2601599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN67_RS11705 (NCTC11404_02328) - 2592127..2593005 (+) 879 WP_027225184.1 lpg2327 family Dot/Icm T4SS effector -
  DQN67_RS11710 (NCTC11404_02329) - 2593269..2593652 (+) 384 WP_027225185.1 hypothetical protein -
  DQN67_RS11715 (NCTC11404_02330) - 2593846..2594076 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  DQN67_RS11720 (NCTC11404_02331) - 2594057..2594953 (+) 897 WP_027225186.1 polyprenyl synthetase family protein -
  DQN67_RS11725 (NCTC11404_02332) bioC 2594997..2595851 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  DQN67_RS11730 (NCTC11404_02333) comFC 2595895..2596599 (+) 705 WP_370696083.1 ComF family protein Machinery gene
  DQN67_RS11735 (NCTC11404_02334) - 2596628..2597701 (-) 1074 WP_027225188.1 M50 family metallopeptidase -
  DQN67_RS11740 (NCTC11404_02335) - 2597758..2598036 (-) 279 WP_027222429.1 hypothetical protein -
  DQN67_RS11745 (NCTC11404_02336) hemA 2598355..2599629 (+) 1275 WP_027225189.1 glutamyl-tRNA reductase -
  DQN67_RS11750 (NCTC11404_02337) prfA 2599613..2600701 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  DQN67_RS11755 (NCTC11404_02338) prmC 2600694..2601557 (+) 864 WP_027225190.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26810.42 Da        Isoelectric Point: 9.2758

>NTDB_id=1140629 DQN67_RS11730 WP_370696083.1 2595895..2596599(+) (comFC) [Legionella pneumophila strain NCTC11404]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMYPKRLKRRGFNQAAVLTRLLARQLKIPYDLHYCQ
KIINTDSQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1140629 DQN67_RS11730 WP_370696083.1 2595895..2596599(+) (comFC) [Legionella pneumophila strain NCTC11404]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGCCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGCCAATGTGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCCTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGTATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAAAATCCCTTATGATTTACATTATTGCCAA
AAAATAATCAATACCGACTCACAAGCTAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGATTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

97.436

100

0.974
  comFC Legionella pneumophila strain ERS1305867

96.939

83.761

0.812

Multiple sequence alignment