Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   T303_RS00230 Genome accession   NZ_CP006819
Coordinates   36024..36980 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus ASCC 1275     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31024..41980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T303_RS00195 (T303_00195) proC 31583..32353 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  T303_RS00200 (T303_00200) - 32383..33045 (-) 663 WP_011681679.1 type II CAAX endopeptidase family protein -
  T303_RS00205 (T303_00205) - 33142..33585 (-) 444 WP_011681680.1 hypothetical protein -
  T303_RS11280 (T303_00210) - 33659..33997 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  T303_RS11285 - 34041..34316 (-) 276 WP_011681681.1 hypothetical protein -
  T303_RS00220 (T303_00215) - 34328..34526 (-) 199 Protein_41 helix-turn-helix transcriptional regulator -
  T303_RS00225 (T303_00220) - 34775..35968 (-) 1194 WP_014608740.1 acetate kinase -
  T303_RS00230 (T303_00225) comYH 36024..36980 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  T303_RS00235 (T303_00230) comGG 37025..37342 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  T303_RS00240 (T303_00235) comYF 37320..37757 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  T303_RS00245 (T303_00240) comGE 37741..38034 (-) 294 WP_024704238.1 competence type IV pilus minor pilin ComGE -
  T303_RS00250 (T303_00245) comYD 38006..38434 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  T303_RS00255 (T303_00250) comYC 38394..38720 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  T303_RS00260 (T303_00255) comYB 38717..39817 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  T303_RS00265 (T303_00260) comGA/cglA/cilD 39699..40640 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  T303_RS00270 (T303_00265) - 40721..41083 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=114061 T303_RS00230 WP_011681684.1 36024..36980(-) (comYH) [Streptococcus thermophilus ASCC 1275]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=114061 T303_RS00230 WP_011681684.1 36024..36980(-) (comYH) [Streptococcus thermophilus ASCC 1275]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment