Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQN21_RS10535 Genome accession   NZ_LS483409
Coordinates   2110040..2110555 (-) Length   171 a.a.
NCBI ID   WP_003066357.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2105040..2115555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS10505 (NCTC13773_02135) - 2106087..2107031 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  DQN21_RS10510 (NCTC13773_02136) - 2107717..2108373 (+) 657 WP_013643410.1 DUF1129 domain-containing protein -
  DQN21_RS10515 (NCTC13773_02137) - 2108418..2108867 (-) 450 WP_077497624.1 hypothetical protein -
  DQN21_RS10520 (NCTC13773_02138) - 2108869..2109078 (-) 210 WP_009854897.1 helix-turn-helix domain-containing protein -
  DQN21_RS10525 (NCTC13773_02139) - 2109081..2109605 (-) 525 WP_077497626.1 hypothetical protein -
  DQN21_RS10530 (NCTC13773_02140) rpsR 2109740..2109979 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQN21_RS10535 (NCTC13773_02141) ssbA 2110040..2110555 (-) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  DQN21_RS10540 (NCTC13773_02142) rpsF 2110567..2110857 (-) 291 WP_003066359.1 30S ribosomal protein S6 -
  DQN21_RS10545 (NCTC13773_02143) - 2111082..2111228 (-) 147 WP_231087899.1 ATP-dependent protease -
  DQN21_RS10550 (NCTC13773_02144) - 2111472..2112020 (-) 549 WP_043913772.1 biotin transporter BioY -
  DQN21_RS10555 (NCTC13773_02145) bioD 2112020..2112688 (-) 669 WP_061458065.1 dethiobiotin synthase -
  DQN21_RS10560 (NCTC13773_02146) bioB 2112681..2113616 (-) 936 WP_013643418.1 biotin synthase BioB -
  DQN21_RS10565 (NCTC13773_02147) ahpF 2113893..2115431 (-) 1539 WP_077497629.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18919.49 Da        Isoelectric Point: 4.7187

>NTDB_id=1140585 DQN21_RS10535 WP_003066357.1 2110040..2110555(-) (ssbA) [Streptococcus gallolyticus strain NCTC13773]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQSSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1140585 DQN21_RS10535 WP_003066357.1 2110040..2110555(-) (ssbA) [Streptococcus gallolyticus strain NCTC13773]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCTGTTGC
CACATTTACACTTGCTGTAAATCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACG
ATGGTGGTTTCTCATCGCAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596

Multiple sequence alignment