Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQN21_RS07575 Genome accession   NZ_LS483409
Coordinates   1494773..1496275 (-) Length   500 a.a.
NCBI ID   WP_077497048.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1466667..1532241 1494773..1496275 within 0


Gene organization within MGE regions


Location: 1466667..1532241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS07455 (NCTC13773_01516) infC 1466885..1467415 (-) 531 WP_003065423.1 translation initiation factor IF-3 -
  DQN21_RS07460 (NCTC13773_01518) cmk 1467581..1468261 (-) 681 WP_077497022.1 (d)CMP kinase -
  DQN21_RS07465 (NCTC13773_01519) - 1468277..1468771 (-) 495 WP_009854460.1 SAG1386/EF1546 family surface-associated protein -
  DQN21_RS07470 - 1468816..1469013 (+) 198 WP_009854461.1 ferredoxin -
  DQN21_RS07475 (NCTC13773_01520) - 1469000..1469491 (-) 492 WP_009854462.1 EbsA family protein -
  DQN21_RS07480 (NCTC13773_01521) pepT 1469545..1470762 (-) 1218 WP_077497024.1 peptidase T -
  DQN21_RS07485 (NCTC13773_01522) - 1470924..1471505 (-) 582 WP_077497026.1 DUF6287 domain-containing protein -
  DQN21_RS07490 (NCTC13773_01523) - 1471518..1474490 (-) 2973 WP_077497028.1 GBS Bsp-like repeat-containing protein -
  DQN21_RS07495 (NCTC13773_01524) - 1474606..1475946 (-) 1341 WP_077497030.1 GBS Bsp-like repeat-containing protein -
  DQN21_RS07500 (NCTC13773_01525) - 1476029..1477618 (-) 1590 WP_077497032.1 beta-carotene 15,15'-monooxygenase -
  DQN21_RS07505 (NCTC13773_01526) - 1477676..1478602 (-) 927 WP_074581183.1 glycosyltransferase family 2 protein -
  DQN21_RS07510 (NCTC13773_01527) - 1478721..1480190 (-) 1470 WP_077497034.1 glucosyltransferase domain-containing protein -
  DQN21_RS07515 (NCTC13773_01528) - 1480210..1482678 (-) 2469 WP_077497036.1 LTA synthase family protein -
  DQN21_RS07520 (NCTC13773_01529) - 1482675..1484435 (-) 1761 WP_077497038.1 rhamnan synthesis F family protein -
  DQN21_RS07525 (NCTC13773_01530) - 1484432..1485778 (-) 1347 WP_077497040.1 glycosyltransferase family 2 protein -
  DQN21_RS07530 (NCTC13773_01531) - 1485775..1486974 (-) 1200 WP_009854474.1 ABC transporter ATP-binding protein -
  DQN21_RS07535 (NCTC13773_01532) - 1486974..1487780 (-) 807 WP_074581188.1 ABC transporter permease -
  DQN21_RS07540 (NCTC13773_01533) - 1487777..1488712 (-) 936 WP_077497042.1 glycosyltransferase family 2 protein -
  DQN21_RS07545 (NCTC13773_01534) cps2T 1488702..1489856 (-) 1155 WP_077497044.1 beta 1-4 rhamnosyltransferase Cps2T -
  DQN21_RS07550 (NCTC13773_01535) rfbD 1490068..1490922 (-) 855 WP_074581190.1 dTDP-4-dehydrorhamnose reductase -
  DQN21_RS12925 (NCTC13773_01536) - 1491011..1491727 (-) 717 WP_331852232.1 hypothetical protein -
  DQN21_RS07560 (NCTC13773_01537) amiF 1491852..1492778 (-) 927 WP_077497046.1 ATP-binding cassette domain-containing protein Regulator
  DQN21_RS07565 (NCTC13773_01538) amiE 1492789..1493841 (-) 1053 WP_074657565.1 ABC transporter ATP-binding protein Regulator
  DQN21_RS07570 (NCTC13773_01539) amiD 1493850..1494776 (-) 927 WP_061459706.1 oligopeptide ABC transporter permease OppC Regulator
  DQN21_RS07575 (NCTC13773_01540) amiC 1494773..1496275 (-) 1503 WP_077497048.1 ABC transporter permease Regulator
  DQN21_RS07580 (NCTC13773_01541) amiA 1496343..1498313 (-) 1971 WP_077497050.1 peptide ABC transporter substrate-binding protein Regulator
  DQN21_RS07585 (NCTC13773_01542) - 1498906..1499241 (-) 336 WP_009854479.1 metal-sulfur cluster assembly factor -
  DQN21_RS07590 (NCTC13773_01543) rpoD 1499263..1500372 (-) 1110 WP_009854480.1 RNA polymerase sigma factor RpoD -
  DQN21_RS07595 (NCTC13773_01544) dnaG 1500381..1502189 (-) 1809 WP_331852238.1 DNA primase -
  DQN21_RS07600 (NCTC13773_01545) mscL 1502510..1502887 (+) 378 WP_009854482.1 large conductance mechanosensitive channel protein MscL -
  DQN21_RS07605 (NCTC13773_01546) rpsU 1502949..1503125 (-) 177 WP_000048058.1 30S ribosomal protein S21 -
  DQN21_RS07610 (NCTC13773_01547) - 1503522..1504862 (-) 1341 WP_077497054.1 ISLre2 family transposase -
  DQN21_RS07615 (NCTC13773_01548) - 1505251..1505439 (-) 189 WP_077497056.1 hypothetical protein -
  DQN21_RS07620 (NCTC13773_01549) - 1505454..1506179 (-) 726 WP_077497058.1 class A sortase -
  DQN21_RS07625 (NCTC13773_01550) - 1506189..1506377 (-) 189 WP_077497060.1 hypothetical protein -
  DQN21_RS07630 (NCTC13773_01551) - 1506482..1508101 (-) 1620 WP_077497062.1 helical hairpin domain-containing protein -
  DQN21_RS07635 (NCTC13773_01552) - 1508073..1508447 (-) 375 WP_077498010.1 plasmid mobilization protein -
  DQN21_RS07645 (NCTC13773_01553) - 1508758..1509051 (-) 294 WP_012961410.1 hypothetical protein -
  DQN21_RS07650 (NCTC13773_01554) - 1509100..1513449 (-) 4350 WP_077497063.1 PBECR4 domain-containing protein -
  DQN21_RS07655 (NCTC13773_01555) - 1513503..1515239 (-) 1737 WP_077497065.1 DNA topoisomerase -
  DQN21_RS07660 (NCTC13773_01556) - 1515303..1515872 (+) 570 WP_077497067.1 hypothetical protein -
  DQN21_RS07665 (NCTC13773_01557) - 1515858..1516331 (-) 474 WP_077497069.1 helix-turn-helix domain-containing protein -
  DQN21_RS12595 (NCTC13773_01558) - 1516405..1516548 (-) 144 WP_167367610.1 hypothetical protein -
  DQN21_RS07670 (NCTC13773_01559) - 1516584..1518614 (-) 2031 WP_077497071.1 VirD4-like conjugal transfer protein, CD1115 family -
  DQN21_RS07675 (NCTC13773_01560) - 1518614..1519108 (-) 495 WP_077497073.1 DUF3801 domain-containing protein -
  DQN21_RS07680 (NCTC13773_01561) - 1519127..1519957 (-) 831 WP_077497075.1 hypothetical protein -
  DQN21_RS07685 (NCTC13773_01562) - 1519957..1520232 (-) 276 WP_077497077.1 hypothetical protein -
  DQN21_RS07690 (NCTC13773_01563) - 1520260..1520652 (-) 393 WP_077497079.1 single-stranded DNA-binding protein -
  DQN21_RS07695 (NCTC13773_01564) - 1520668..1521273 (-) 606 WP_077497081.1 hypothetical protein -
  DQN21_RS07700 (NCTC13773_01565) - 1521290..1523989 (-) 2700 WP_077497083.1 phage tail tip lysozyme -
  DQN21_RS07705 (NCTC13773_01566) - 1524028..1524276 (-) 249 WP_077497085.1 hypothetical protein -
  DQN21_RS12930 - 1524609..1524884 (-) 276 Protein_1455 hypothetical protein -
  DQN21_RS07715 (NCTC13773_01568) - 1524886..1527237 (-) 2352 WP_174564818.1 VirB4-like conjugal transfer ATPase, CD1110 family -
  DQN21_RS07720 (NCTC13773_01569) - 1527224..1527577 (-) 354 WP_064592500.1 PrgI family mobile element protein -
  DQN21_RS12850 - 1527645..1527881 (-) 237 WP_077497091.1 hypothetical protein -
  DQN21_RS07730 (NCTC13773_01570) - 1527913..1528566 (+) 654 WP_331852239.1 DUF6710 family protein -
  DQN21_RS07735 (NCTC13773_01571) - 1528547..1528882 (-) 336 WP_077497095.1 hypothetical protein -
  DQN21_RS07740 (NCTC13773_01573) - 1529159..1529725 (-) 567 WP_077497097.1 hypothetical protein -
  DQN21_RS07745 (NCTC13773_01574) - 1529729..1530229 (-) 501 WP_077497099.1 hypothetical protein -
  DQN21_RS07750 (NCTC13773_01575) - 1530442..1530972 (-) 531 WP_077497101.1 hypothetical protein -
  DQN21_RS07755 (NCTC13773_01576) - 1531011..1531763 (-) 753 WP_077497103.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56239.68 Da        Isoelectric Point: 10.3083

>NTDB_id=1140574 DQN21_RS07575 WP_077497048.1 1494773..1496275(-) (amiC) [Streptococcus gallolyticus strain NCTC13773]
MKKYIGMRVLRSFVSIFLVTTLTYLIIYSLVPRSLIFSQDPNYNKMAATPDRRVNYEATVLKRTSYIDYMDSKDLQKKAS
KIDSEVTTAVTTKNKKIYQKYIKSIGRNWQLYQFPESKKFYAVRDIPLYERVFRFYSHLIVIDHPWKIKDSSNPNLKRYV
RFENDPAIGPALVGSGTEYKYLLYFNSSFPYIHQNIITMNLGISYPSYANLPILQVIGQGQGKTEAREVTFPTGKTKMSS
IDIYSRTYKSPKKADAMAIDNFGKGDAYTATRNHYSDPSMVSNSVRIGIIGVIISYAFGLPIGLLMARFKNGFFDRFSTG
VTTFLLALPSIAIIYAIRFIGSALGLPDSFPSLGAHDWRSYALPAFILGFLSIPGTVVWFRRYVVDLQNSDFVRFARAKG
LSENEISRKHLFKQAMVPVVNGIPEAILGTIVGATLTETIFAFPGMGKMLIDSIKATNNAMVVGLVFLFTSLSVISLLLG
DLLMVILDPRIKLASKGGKR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1140574 DQN21_RS07575 WP_077497048.1 1494773..1496275(-) (amiC) [Streptococcus gallolyticus strain NCTC13773]
ATGAAAAAATATATTGGAATGCGTGTCTTACGTTCATTTGTCTCGATTTTTCTAGTGACAACGTTGACATATTTAATTAT
TTATTCTTTGGTTCCTAGGAGTTTAATTTTTAGCCAAGACCCTAACTACAATAAAATGGCAGCAACGCCTGACAGACGCG
TCAATTATGAAGCGACAGTTTTAAAACGCACGAGCTATATTGACTACATGGATAGTAAAGACTTGCAGAAGAAAGCGTCT
AAAATTGATTCTGAAGTGACAACGGCTGTTACAACTAAAAATAAGAAAATTTATCAAAAATACATCAAAAGTATTGGTCG
CAATTGGCAATTATATCAATTTCCAGAAAGTAAAAAATTCTATGCCGTTCGCGATATCCCTTTGTATGAACGTGTTTTCC
GTTTTTATTCACATTTGATTGTGATTGATCATCCGTGGAAAATCAAAGATTCTTCAAATCCAAATTTAAAACGATACGTT
CGTTTTGAAAATGATCCTGCCATTGGTCCAGCCTTGGTTGGCTCGGGCACGGAATATAAATATTTGCTTTACTTTAATAG
CAGTTTTCCTTACATTCATCAAAATATCATAACAATGAATCTTGGAATTTCTTATCCAAGTTATGCTAATCTACCTATTT
TACAAGTTATTGGGCAAGGGCAAGGGAAAACGGAAGCAAGGGAAGTGACTTTCCCAACGGGGAAAACGAAGATGAGTTCG
ATTGACATTTATTCGCGCACTTATAAATCTCCTAAGAAAGCCGATGCGATGGCGATTGATAATTTTGGAAAAGGTGATGC
TTATACAGCAACGCGAAATCATTATTCTGATCCGTCTATGGTGTCTAATTCAGTCAGAATCGGCATTATCGGTGTTATTA
TTTCTTATGCTTTTGGTTTGCCAATTGGGCTTTTAATGGCACGTTTTAAAAATGGCTTTTTTGACCGTTTCTCAACTGGT
GTGACAACGTTCTTGTTAGCTTTACCAAGTATTGCAATTATTTATGCAATTCGTTTTATTGGTTCGGCGCTAGGTTTGCC
AGATTCGTTTCCATCTTTGGGAGCACATGATTGGCGTTCATATGCCCTTCCTGCCTTTATCTTAGGATTTCTTAGCATTC
CAGGAACAGTTGTTTGGTTCAGACGTTACGTGGTTGATTTGCAAAATAGCGATTTTGTCCGTTTTGCGCGTGCAAAAGGG
TTGTCTGAAAATGAAATTTCACGAAAACATTTGTTTAAACAAGCCATGGTTCCTGTTGTTAATGGTATCCCTGAAGCGAT
TTTAGGCACGATTGTTGGAGCGACTTTGACAGAGACAATCTTTGCTTTTCCTGGGATGGGAAAAATGTTGATTGATTCCA
TTAAAGCGACAAACAATGCTATGGTTGTCGGTCTTGTTTTCTTATTTACAAGCTTATCTGTTATTTCACTTTTACTGGGT
GATTTGTTAATGGTTATCTTAGATCCACGCATCAAGTTAGCTTCGAAAGGAGGAAAAAGATGA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

64.329

99.8

0.642
  amiC Streptococcus salivarius strain HSISS4

63.928

99.8

0.638
  amiC Streptococcus thermophilus LMD-9

63.928

99.8

0.638

Multiple sequence alignment