Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQN33_RS09195 Genome accession   NZ_LS483408
Coordinates   1837285..1838652 (-) Length   455 a.a.
NCBI ID   WP_046388363.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832285..1843652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS09175 (NCTC4674_01935) - 1832654..1833964 (-) 1311 WP_111673545.1 hypothetical protein -
  DQN33_RS09180 (NCTC4674_01936) gltX 1834091..1835536 (-) 1446 WP_111673546.1 glutamate--tRNA ligase -
  DQN33_RS09185 (NCTC4674_01937) - 1835720..1836433 (-) 714 WP_172455894.1 TIGR00266 family protein -
  DQN33_RS09190 (NCTC4674_01938) - 1836628..1837125 (-) 498 WP_015911974.1 beta-class carbonic anhydrase -
  DQN33_RS09195 (NCTC4674_01939) radA 1837285..1838652 (-) 1368 WP_046388363.1 DNA repair protein RadA Machinery gene
  DQN33_RS09200 (NCTC4674_01940) - 1838700..1839146 (-) 447 WP_111673547.1 dUTP diphosphatase -
  DQN33_RS09205 (NCTC4674_01941) - 1839261..1839620 (-) 360 WP_046391641.1 YbaN family protein -
  DQN33_RS09210 (NCTC4674_01942) - 1839809..1840411 (+) 603 WP_111673548.1 NADPH-dependent FMN reductase -
  DQN33_RS09215 (NCTC4674_01943) - 1840430..1841677 (+) 1248 WP_111673549.1 NAD(P)H-dependent oxidoreductase -
  DQN33_RS09220 (NCTC4674_01944) - 1841954..1842388 (+) 435 WP_052715015.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49676.17 Da        Isoelectric Point: 6.6524

>NTDB_id=1140526 DQN33_RS09195 WP_046388363.1 1837285..1838652(-) (radA) [Streptococcus uberis strain NCTC4674]
MAKKKATYVCQECGYQSPKYLGRCPNCSAWSSFIEEVEVKEVKNARVSLTGEKSRPVKLKDVDNINYARTKTDMEEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIE
KIAPDFLIIDSIQTIMSPEIQGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRISLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEMPTNPQEAFLGEIGLTGEIR
RVTRMEQRINEAAKLGFTKIYAPKNALHGIGIPKGIQVVGVTTVGEVLKAVFSKA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1140526 DQN33_RS09195 WP_046388363.1 1837285..1838652(-) (radA) [Streptococcus uberis strain NCTC4674]
ATGGCTAAAAAGAAAGCGACATATGTTTGTCAGGAGTGTGGCTATCAATCCCCTAAATACCTTGGCAGATGTCCTAATTG
CTCAGCTTGGTCTTCTTTTATAGAAGAGGTTGAGGTGAAAGAGGTAAAAAATGCGCGTGTGAGTTTGACTGGGGAGAAAA
GTAGACCTGTAAAGCTTAAAGATGTTGATAACATCAATTACGCCCGAACTAAGACGGATATGGAGGAGTTTAACCGAGTT
CTTGGTGGTGGTGTCGTACCAGGCAGTTTAATCTTAATCGGTGGCGATCCGGGCATTGGAAAATCTACTTTATTATTACA
AGTGTCCACACAATTAGCAAATAAGGGAACTGTCTTGTATGTATCTGGCGAAGAATCAGCCGAACAAATTAAGTTAAGAA
GTGAGCGTTTAGGTGATATTGATAATGAATTTTACCTTTATGCTGAAACCAATATGCAGAGCATTCGTTCAGAAATCGAA
AAAATAGCACCTGATTTTTTGATTATAGACTCTATTCAAACCATCATGAGTCCAGAGATTCAAGGTGTTCAGGGATCTGT
TAGTCAGGTCCGTGAAGTGACAGCTGAATTAATGCAATTGGCTAAAACGAATAATATAGCGACTTTCATTGTGGGTCATG
TCACAAAGGAAGGAACAATTGCTGGCCCACGGATGCTTGAACATATGGTTGACACTGTTCTTTATTTTGAAGGTGAAAGG
CATCATACCTTCCGAATTTTGAGGGCAGTTAAAAATCGATTCGGCTCTACAAATGAAATTGGTATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAAGTTCTCAATCCGAGTCAAGTGTTTTTAGAAGAACGCTTGGATGGCGCCACAGGTTCTGCCATTG
TCGTTACTATGGAAGGCAGTCGTCCGATTTTGGCTGAGGTTCAATCTTTAGTTACGCCTACCGTTTTTGGAAATGCCAGA
AGAACGACCACAGGTCTTGATTTTAACAGAATTAGCTTGATTATGGCTGTTTTAGAAAAACGGTGTGGTCTTTTATTACA
AAATCAAGATGCCTATCTGAAGTCAGCTGGTGGAGTTAAGTTAGATGAACCTGCTATCGATTTGGCTGTCGCAGTAGCCA
TTGCCTCTAGCTACAAAGAAATGCCGACAAACCCCCAAGAAGCCTTTTTAGGTGAAATTGGGCTGACAGGTGAAATCAGA
AGGGTAACTCGAATGGAACAAAGAATCAACGAAGCGGCTAAATTAGGCTTTACAAAAATTTATGCCCCCAAAAATGCATT
ACATGGTATTGGTATTCCCAAAGGGATTCAAGTTGTAGGGGTCACAACCGTCGGTGAGGTTTTAAAGGCAGTATTTTCCA
AAGCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(55-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.417

99.56

0.87
  radA Streptococcus pneumoniae D39

87.417

99.56

0.87
  radA Streptococcus pneumoniae R6

87.417

99.56

0.87
  radA Streptococcus pneumoniae TIGR4

87.417

99.56

0.87
  radA Streptococcus mitis NCTC 12261

87.417

99.56

0.87
  radA Streptococcus mitis SK321

87.196

99.56

0.868
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

99.56

0.609

Multiple sequence alignment