Detailed information NTG1140525

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: DQN33_RS08925
• Genome accession: NZ_LS483408
• Coordinates: 1780127..1781173 (-)
• Length: 348 a.a.
• NCBI ID: WP_015911921.1
• Uniprot ID: -
• Organism: Streptococcus uberis strain NCTC4674
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1775127..1786173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN33_RS08900 (NCTC4674_01878)	rimI	1775772..1776197 (-)	426	WP_111673528.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQN33_RS08905 (NCTC4674_01879)	tsaB	1776205..1776897 (-)	693	WP_046389693.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQN33_RS08910 (NCTC4674_01880)	-	1777179..1777409 (+)	231	WP_037592642.1	DNA-dependent RNA polymerase subunit epsilon	-
DQN33_RS08915 (NCTC4674_01881)	rnjA	1777411..1779093 (+)	1683	WP_015911919.1	ribonuclease J1	-
DQN33_RS08920 (NCTC4674_01882)	amiF	1779192..1780127 (-)	936	WP_111673529.1	ABC transporter ATP-binding protein	Regulator
DQN33_RS08925 (NCTC4674_01883)	oppD	1780127..1781173 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
DQN33_RS08930 (NCTC4674_01884)	-	1781185..1782216 (-)	1032	WP_015911922.1	ABC transporter permease	-
DQN33_RS08935 (NCTC4674_01885)	-	1782226..1783140 (-)	915	WP_111673530.1	ABC transporter permease	-
DQN33_RS08940 (NCTC4674_01886)	-	1783215..1784873 (-)	1659	WP_111673531.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38504.09 Da
• Isoelectric Point: 5.1474

>NTDB_id=1140525 DQN33_RS08925 WP_015911921.1 1780127..1781173(-) (oppD) [Streptococcus uberis strain NCTC4674]
MSKETILSVNNLHVDFKTYAGDVKAIRDINFELKKGETLAIVGESGSGKSVTTRTLMGLNAKNATISGDIDFKGRKLNEL
KEQDWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHEKVSKADALSRALELMKQVGIPDAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQNQILKLMKELQSQISSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAARNEYALDIDHEEEPPMFKVSETHYAATWLL
DERAPKVTPPLPIQKRWAKWAEKERGQA

Nucleotide

• Length: 1047 bp

>NTDB_id=1140525 DQN33_RS08925 WP_015911921.1 1780127..1781173(-) (oppD) [Streptococcus uberis strain NCTC4674]
ATGTCAAAAGAAACAATTTTGAGTGTTAACAACCTCCATGTTGATTTTAAAACTTATGCTGGAGATGTTAAAGCTATTCG
CGATATTAACTTTGAGTTAAAAAAAGGTGAAACGCTTGCTATCGTTGGTGAATCAGGTTCTGGGAAATCTGTAACAACGA
GAACCTTAATGGGATTAAATGCAAAAAATGCCACTATATCAGGTGACATTGATTTCAAAGGGAGAAAGCTCAATGAGCTT
AAAGAACAAGATTGGGTTAAAGTTCGTGGTAAAGAAATTGCGATGATTTTCCAAGACCCAATGACCAGTTTAGACCCAAC
AATGAAAATTGGCATGCAAATTGCAGAAGCTATCTTGATTCACGAAAAAGTATCTAAAGCTGACGCATTATCACGTGCAT
TAGAATTGATGAAACAAGTTGGCATTCCAGATGCTGAAGAACATATTAATGATTATCCACATCAATGGTCTGGTGGTATG
AGACAACGTGCGGTAATTGCCATTGCTCTTGCAGCTAATCCTGAAATTCTCATCGCAGATGAGCCAACAACAGCCTTGGA
CGTAACCATTCAAAATCAAATTTTAAAATTGATGAAAGAATTACAGTCACAAATTTCATCTTCTATTATTTTCATCACCC
ATGATCTTGGTGTGGTAGCTGGTATGGCTGATCGTGTAGCGGTAATGTATGCTGGGAAAATTGTTGAGTATGGAACTGTA
GATGAAGTATTCTATAATCCACAACACCCATATACATGGGGATTATTGAATTCCATGCCAACGACTGATACAGAAGCAGG
AAGCTTGCAATCTATTCCAGGAACACCTCCTGACTTATTGAATCCTCCAAAAGGAGATGCATTTGCAGCTCGTAATGAAT
ACGCTCTTGATATTGATCATGAAGAAGAGCCACCAATGTTTAAAGTCAGTGAAACACACTATGCTGCAACATGGTTATTG
GATGAACGTGCTCCTAAGGTAACACCTCCTCTTCCAATCCAAAAACGTTGGGCAAAATGGGCTGAAAAAGAAAGGGGACA
AGCTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

• ABC transporter (ABC_tran) (27-183)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	80.588	97.701	0.787
amiE	Streptococcus salivarius strain HSISS4	57.015	96.264	0.549
amiE	Streptococcus thermophilus LMG 18311	56.418	96.264	0.543
amiE	Streptococcus thermophilus LMD-9	56.418	96.264	0.543