Detailed information NTG1140524

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQN33_RS08920
• Genome accession: NZ_LS483408
• Coordinates: 1779192..1780127 (-)
• Length: 311 a.a.
• NCBI ID: WP_111673529.1
• Uniprot ID: -
• Organism: Streptococcus uberis strain NCTC4674
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1774192..1785127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN33_RS08890 (NCTC4674_01876)	rpsN	1774388..1774657 (+)	270	WP_015911914.1	30S ribosomal protein S14	-
DQN33_RS08895 (NCTC4674_01877)	tsaD	1774769..1775782 (-)	1014	WP_111673527.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
DQN33_RS08900 (NCTC4674_01878)	rimI	1775772..1776197 (-)	426	WP_111673528.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQN33_RS08905 (NCTC4674_01879)	tsaB	1776205..1776897 (-)	693	WP_046389693.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQN33_RS08910 (NCTC4674_01880)	-	1777179..1777409 (+)	231	WP_037592642.1	DNA-dependent RNA polymerase subunit epsilon	-
DQN33_RS08915 (NCTC4674_01881)	rnjA	1777411..1779093 (+)	1683	WP_015911919.1	ribonuclease J1	-
DQN33_RS08920 (NCTC4674_01882)	amiF	1779192..1780127 (-)	936	WP_111673529.1	ABC transporter ATP-binding protein	Regulator
DQN33_RS08925 (NCTC4674_01883)	oppD	1780127..1781173 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
DQN33_RS08930 (NCTC4674_01884)	-	1781185..1782216 (-)	1032	WP_015911922.1	ABC transporter permease	-
DQN33_RS08935 (NCTC4674_01885)	-	1782226..1783140 (-)	915	WP_111673530.1	ABC transporter permease	-
DQN33_RS08940 (NCTC4674_01886)	-	1783215..1784873 (-)	1659	WP_111673531.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35253.14 Da
• Isoelectric Point: 6.3525

>NTDB_id=1140524 DQN33_RS08920 WP_111673529.1 1779192..1780127(-) (amiF) [Streptococcus uberis strain NCTC4674]
MTENRKKLVELKNVSLIFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGEKVSHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTKTKQEREDRVQELLEHVGLNRDHVTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQEDRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERKRVAEIYDPSAEDDGQEREMREITPGHFVLSTEAEAAEYKAKCQK

Nucleotide

• Length: 936 bp

>NTDB_id=1140524 DQN33_RS08920 WP_111673529.1 1779192..1780127(-) (amiF) [Streptococcus uberis strain NCTC4674]
ATGACTGAAAATCGTAAAAAATTAGTTGAGCTCAAAAATGTCTCTCTAATCTTTAACAAAGGCAAAAAAAATGAAGTGAA
AGCCATTAATAATGTTAGTTTTGACATTTATGAAGGCGAAGTATTTGGACTGGTTGGTGAATCAGGTTCAGGTAAAACAA
CTGTTGGACGTGCGATATTAAAACTTTATGATATCAATGAGGGTGAAATTATTTTCAATGGCGAAAAAGTTTCTCATCTC
AAAGGTAAAGAATTACATGAGTTCAGAAAGAATGCTCAAATGATTTTCCAAGATCCACAAGCAAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCTGAAGGACTTGATATCCATGGCCTAACCAAAACGAAACAAGAGCGTGAAGATAGGGTTC
AAGAATTGTTAGAGCATGTTGGACTTAATAGAGACCACGTGACACGCTATCCACACGAATTCTCTGGAGGACAACGTCAA
CGTATTGGCATTGCTCGTGCCCTTGCCGTTCAACCTAAGTTTATCATCGCTGATGAACCAATTTCAGCACTGGATGTATC
CATTCAGGCACAGGTTGTTAACCTCATGCAAAAATTACAAGAAGATAGAGGTTTGACCTATCTCTTTATCGCCCACGATT
TGTCAATGGTTAAATACATTTCTGACCGAATTGGGGTTATGCATTGGGGCAAAATGCTAGAAATTGGAACATCTGATGAT
GTTTACAATAACCCAATCCATCCTTATACAAGAAGTTTGCTTTCAGCAATTCCAGAGCCAGATCCAGACATTGAGCGTAA
GCGTGTCGCAGAAATCTATGACCCAAGTGCTGAGGATGATGGACAAGAAAGAGAAATGCGTGAAATTACACCAGGACACT
TTGTTCTATCAACAGAAGCAGAAGCTGCTGAATACAAAGCAAAATGCCAAAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.545	99.035	0.54
amiF	Streptococcus thermophilus LMG 18311	54.221	99.035	0.537
amiF	Streptococcus salivarius strain HSISS4	54.221	99.035	0.537