Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM86_RS09550 Genome accession   NZ_LS483407
Coordinates   53869..53964 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13744     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48869..58964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM86_RS00315 (NCTC13744_00063) purK 48937..50010 (+) 1074 WP_032460884.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQM86_RS09345 (NCTC13744_00064) - 50012..50410 (+) 399 WP_227875639.1 hypothetical protein -
  DQM86_RS00320 (NCTC13744_00065) - 50421..51431 (+) 1011 WP_227875640.1 hypothetical protein -
  DQM86_RS00325 (NCTC13744_00066) purB 51451..52743 (+) 1293 WP_030127622.1 adenylosuccinate lyase -
  DQM86_RS00330 (NCTC13744_00067) comR 52874..53785 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQM86_RS09550 (NCTC13744_00068) comS 53869..53964 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQM86_RS00335 (NCTC13744_00069) ruvB 54011..55009 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQM86_RS00340 (NCTC13744_00070) - 55147..55584 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQM86_RS00345 (NCTC13744_00071) - 55607..56008 (+) 402 WP_012560369.1 MORN repeat-containing protein -
  DQM86_RS00350 (NCTC13744_00072) - 56005..57780 (+) 1776 WP_002994672.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1140482 DQM86_RS09550 WP_198462994.1 53869..53964(+) (comS) [Streptococcus pyogenes strain NCTC13744]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1140482 DQM86_RS09550 WP_198462994.1 53869..53964(+) (comS) [Streptococcus pyogenes strain NCTC13744]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment