Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N507_RS08740 Genome accession   NZ_CP006804
Coordinates   1761275..1761865 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus DSM 14870     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1758897..1772197 1761275..1761865 within 0


Gene organization within MGE regions


Location: 1758897..1772197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N507_RS08715 - 1759230..1759460 (+) 231 WP_005690384.1 hypothetical protein -
  N507_RS15610 - 1759555..1760067 (+) 513 WP_223804855.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  N507_RS08725 - 1760195..1760281 (-) 87 Protein_1583 deoxyribose-phosphate aldolase -
  N507_RS08730 (N507_1699) ssb 1760391..1760822 (+) 432 WP_005690380.1 single-stranded DNA-binding protein -
  N507_RS08735 (N507_1700) rpsF 1760949..1761245 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  N507_RS08740 (N507_1701) ssb 1761275..1761865 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  N507_RS08745 (N507_1702) rpsR 1761957..1762193 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  N507_RS08760 (N507_1704) - 1762587..1763093 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  N507_RS08765 (N507_1706) - 1763404..1764882 (+) 1479 WP_031546884.1 cytochrome ubiquinol oxidase subunit I -
  N507_RS08770 (N507_1707) cydB 1764875..1765894 (+) 1020 WP_014568875.1 cytochrome d ubiquinol oxidase subunit II -
  N507_RS08775 (N507_1708) - 1765934..1766128 (+) 195 WP_005707490.1 hypothetical protein -
  N507_RS08780 - 1766207..1766464 (-) 258 WP_015764802.1 hypothetical protein -
  N507_RS08785 (N507_1710) - 1766620..1767636 (+) 1017 WP_014568877.1 IS30 family transposase -
  N507_RS08795 (N507_1712) - 1768672..1769349 (+) 678 WP_014568879.1 CPBP family intramembrane glutamic endopeptidase -
  N507_RS08800 (N507_1713) - 1769741..1770616 (+) 876 WP_049166548.1 CPBP family intramembrane glutamic endopeptidase -
  N507_RS08805 - 1770975..1771238 (+) 264 WP_014568883.1 hypothetical protein -
  N507_RS08810 (N507_1715) - 1771379..1772167 (-) 789 WP_095691997.1 ABC transporter permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=114047 N507_RS08740 WP_005709832.1 1761275..1761865(+) (ssb) [Lacticaseibacillus rhamnosus DSM 14870]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=114047 N507_RS08740 WP_005709832.1 1761275..1761865(+) (ssb) [Lacticaseibacillus rhamnosus DSM 14870]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505

Multiple sequence alignment