Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQN23_RS02945 Genome accession   NZ_LS483403
Coordinates   544234..546036 (+) Length   600 a.a.
NCBI ID   WP_020916433.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 539234..551036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS02920 (NCTC13774_00600) queA 539894..540922 (-) 1029 WP_020916428.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQN23_RS02925 (NCTC13774_00601) - 541086..541592 (+) 507 WP_058833169.1 VIT1/CCC1 transporter family protein -
  DQN23_RS02930 (NCTC13774_00602) nagB 541725..542432 (+) 708 WP_111712678.1 glucosamine-6-phosphate deaminase -
  DQN23_RS02935 (NCTC13774_00603) - 542506..543222 (+) 717 WP_111712679.1 pseudouridine synthase -
  DQN23_RS02940 (NCTC13774_00604) coiA 543272..544234 (+) 963 WP_111712680.1 competence protein CoiA Machinery gene
  DQN23_RS02945 (NCTC13774_00605) pepF 544234..546036 (+) 1803 WP_020916433.1 oligoendopeptidase F Regulator
  DQN23_RS02950 (NCTC13774_00606) - 546105..546602 (+) 498 WP_111713073.1 GNAT family N-acetyltransferase -
  DQN23_RS02955 (NCTC13774_00607) - 546622..547233 (+) 612 WP_020916435.1 HAD-IA family hydrolase -
  DQN23_RS02960 (NCTC13774_00608) - 547281..547982 (+) 702 WP_111712681.1 O-methyltransferase -
  DQN23_RS02965 (NCTC13774_00609) - 548052..549113 (+) 1062 WP_111712682.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69085.17 Da        Isoelectric Point: 4.7843

>NTDB_id=1140346 DQN23_RS02945 WP_020916433.1 544234..546036(+) (pepF) [Streptococcus lutetiensis strain NCTC13774]
MSDNRSHIDEKYKWDLSTVFATDDAWEAELAKLDAGLEDAKKYKGHLTQSSKNLLTMTEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMKLSAEDFAAFVAETPALSAYTHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPEVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDRVNAHLSLLHRYVALRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAIFGKDYSERVHRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1140346 DQN23_RS02945 WP_020916433.1 544234..546036(+) (pepF) [Streptococcus lutetiensis strain NCTC13774]
ATGTCAGATAATCGTAGTCATATCGATGAAAAATATAAATGGGATCTAAGCACTGTTTTTGCGACTGATGACGCTTGGGA
GGCTGAATTAGCTAAGTTAGATGCTGGTTTAGAAGATGCTAAAAAATACAAAGGTCACTTGACGCAATCAAGTAAGAATT
TGCTAACTATGACGGAGCATTATCTTGATTTGTCACGCAGATTGGAAAAAGTTTACGTCTATGCATCAATGAAAAATGAC
CAAGATACAACAGTGGCAAAATACCAAGAATACCAAGCTAAAGCCACAGCACTTTATGCTAAATACAGTGAAGTCTTTGC
TTTTTACGAACCAGAATTGATGAAATTATCAGCTGAAGATTTTGCGGCATTTGTTGCTGAGACGCCAGCACTATCAGCTT
ATACGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACATGTCTTGTCACAAAAAGAAGAAGAACTCTTAGCTGGTGCA
CACGAAATTTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTGGATAATGCTGATATTGTTTTCCCAGAGGTTTTAGATGA
TGAAGGCAATGAGGTACAATTAACACATGGTAATTTCATTAGTCTTTTGGAATCAAAAAATCGCGACGTCCGAAAAGCAG
CTTATGAAGCGATGTATGCCACTTATGAACAATTCCAACACACTTACGCTAAGACATTACAGACAAATGTTAAGGTTCAT
AACTATGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACCGTGTGAATGCACACTTGTCACTGCTTCATCGTTATGTGGCACTTCGTAAGAAAGTTCTTAAAT
TGGACGATTTGAAAATGTATGATATTCATACACCATTGTCTGAAATGGATATGAGTTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTATCTTCGGTAAAGATTATTCTGAACGTGTTCACCGTGCTTTCACAGAACGTTGGATTGA
CGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGGCTTACGATACCAACGCCTTTATGCTTTTGAACT
GGCAAGATACGCTTGATAATCTGTTTACTTTGGTACATGAAACTGGGCACAGCCTTCATTCAACATTTACTCGTGAAAAT
CAACCGTATGTCTACGGTGATTACAGCATTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATATTTTAACGGAAAC
GCTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGTTTTAAAGGAACAATCT
TCCGTCAAGCACAATTTGCAGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGCGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCGGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAACTATTATGTTTATCAATACGCAACAGGTTTTGCAGCAGCAAGCTACCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGTAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGCCT
AAATGAACTAGAAGCCTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72

100

0.72

Multiple sequence alignment