Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | N506_RS07265 | Genome accession | NZ_CP006803 |
| Coordinates | 1494032..1494550 (-) | Length | 172 a.a. |
| NCBI ID | WP_003648134.1 | Uniprot ID | A0A133PDF0 |
| Organism | Lactobacillus gasseri DSM 14869 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1489032..1499550
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N506_RS07245 (N506_1493) | rplI | 1490168..1490623 (-) | 456 | WP_039155375.1 | 50S ribosomal protein L9 | - |
| N506_RS07250 (N506_1494) | - | 1490635..1492653 (-) | 2019 | WP_003648132.1 | DHH family phosphoesterase | - |
| N506_RS07255 (N506_1495) | - | 1492759..1493676 (-) | 918 | WP_095670204.1 | magnesium transporter CorA family protein | - |
| N506_RS07260 (N506_1496) | rpsR | 1493771..1494007 (-) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| N506_RS07265 (N506_1497) | ssb | 1494032..1494550 (-) | 519 | WP_003648134.1 | single-stranded DNA-binding protein | Machinery gene |
| N506_RS07270 (N506_1498) | rpsF | 1494584..1494880 (-) | 297 | WP_003648136.1 | 30S ribosomal protein S6 | - |
| N506_RS07275 (N506_1499) | gyrA | 1495067..1497556 (-) | 2490 | WP_095670205.1 | DNA gyrase subunit A | - |
| N506_RS07280 (N506_1500) | gyrB | 1497567..1499534 (-) | 1968 | WP_095670206.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18499.16 Da Isoelectric Point: 4.7531
>NTDB_id=114024 N506_RS07265 WP_003648134.1 1494032..1494550(-) (ssb) [Lactobacillus gasseri DSM 14869]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=114024 N506_RS07265 WP_003648134.1 1494032..1494550(-) (ssb) [Lactobacillus gasseri DSM 14869]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCTGCAGAGAATTTTGCTAACTTTACTTCCAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTACTAGAATCACGTCG
CGACCGTGAAAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACTATTGATATCTCGGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCTGCAGAGAATTTTGCTAACTTTACTTCCAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTACTAGAATCACGTCG
CGACCGTGAAAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACTATTGATATCTCGGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.494 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.432 |
100 |
0.506 |