Detailed information NTG1140183

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: DQM95_RS08900
• Genome accession: NZ_LS483397
• Coordinates: 1730535..1731581 (-)
• Length: 348 a.a.
• NCBI ID: WP_015911921.1
• Uniprot ID: -
• Organism: Streptococcus uberis strain NCTC3858
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1725535..1736581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM95_RS08875 (NCTC3858_01805)	rimI	1726182..1726607 (-)	426	WP_046393730.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM95_RS08880 (NCTC3858_01806)	tsaB	1726615..1727307 (-)	693	WP_037592644.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM95_RS08885 (NCTC3858_01807)	-	1727589..1727819 (+)	231	WP_037592642.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM95_RS08890 (NCTC3858_01808)	rnjA	1727821..1729503 (+)	1683	WP_037592640.1	ribonuclease J1	-
DQM95_RS08895 (NCTC3858_01809)	amiF	1729600..1730535 (-)	936	WP_015911920.1	ABC transporter ATP-binding protein	Regulator
DQM95_RS08900 (NCTC3858_01810)	oppD	1730535..1731581 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
DQM95_RS08905 (NCTC3858_01811)	-	1731593..1732624 (-)	1032	WP_015911922.1	ABC transporter permease	-
DQM95_RS08910 (NCTC3858_01812)	-	1732634..1733548 (-)	915	WP_015911923.1	ABC transporter permease	-
DQM95_RS08915 (NCTC3858_01813)	-	1733623..1735281 (-)	1659	WP_037592637.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38504.09 Da
• Isoelectric Point: 5.1474

>NTDB_id=1140183 DQM95_RS08900 WP_015911921.1 1730535..1731581(-) (oppD) [Streptococcus uberis strain NCTC3858]
MSKETILSVNNLHVDFKTYAGDVKAIRDINFELKKGETLAIVGESGSGKSVTTRTLMGLNAKNATISGDIDFKGRKLNEL
KEQDWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHEKVSKADALSRALELMKQVGIPDAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQNQILKLMKELQSQISSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAARNEYALDIDHEEEPPMFKVSETHYAATWLL
DERAPKVTPPLPIQKRWAKWAEKERGQA

Nucleotide

• Length: 1047 bp

>NTDB_id=1140183 DQM95_RS08900 WP_015911921.1 1730535..1731581(-) (oppD) [Streptococcus uberis strain NCTC3858]
ATGTCAAAAGAAACAATTTTGAGTGTTAACAACCTCCATGTCGATTTTAAAACTTATGCTGGAGATGTTAAAGCTATTCG
CGATATTAACTTTGAGTTAAAAAAAGGTGAAACGCTTGCTATCGTTGGTGAATCAGGTTCTGGGAAATCTGTAACAACGA
GAACCTTAATGGGATTAAATGCAAAAAATGCCACTATATCAGGTGACATTGATTTCAAAGGGAGAAAGCTCAATGAGCTT
AAAGAACAAGATTGGGTTAAAGTTCGTGGTAAAGAAATTGCGATGATTTTCCAAGACCCAATGACCAGTTTAGACCCAAC
AATGAAAATTGGCATGCAAATTGCAGAAGCTATCTTGATTCACGAAAAAGTATCTAAAGCTGACGCATTATCACGTGCAT
TAGAATTGATGAAACAAGTTGGCATTCCAGATGCTGAAGAACATATTAATGATTATCCACATCAATGGTCTGGTGGTATG
AGACAACGTGCGGTAATTGCCATTGCTCTTGCCGCTAATCCTGAAATTCTCATCGCAGATGAGCCAACAACAGCCTTGGA
TGTAACCATTCAAAATCAAATTTTAAAATTGATGAAAGAATTACAATCACAAATTTCATCTTCTATTATTTTCATCACCC
ATGATCTTGGTGTGGTAGCTGGTATGGCTGATCGTGTAGCGGTAATGTATGCTGGGAAAATTGTTGAGTATGGAACTGTA
GATGAAGTATTCTATAATCCACAACACCCATATACATGGGGATTATTGAATTCCATGCCAACGACTGATACAGAAGCAGG
AAGCTTGCAATCTATTCCAGGAACACCTCCTGACTTATTGAATCCTCCAAAAGGAGATGCATTTGCAGCTCGTAATGAAT
ACGCTCTTGATATTGATCATGAAGAAGAGCCACCAATGTTTAAAGTCAGTGAAACACACTATGCTGCAACATGGTTATTG
GATGAACGTGCACCTAAGGTAACACCTCCTCTTCCAATCCAAAAACGTTGGGCAAAATGGGCTGAAAAAGAAAGGGGACA
AGCTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

• ABC transporter (ABC_tran) (27-183)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	80.588	97.701	0.787
amiE	Streptococcus salivarius strain HSISS4	57.015	96.264	0.549
amiE	Streptococcus thermophilus LMG 18311	56.418	96.264	0.543
amiE	Streptococcus thermophilus LMD-9	56.418	96.264	0.543