Detailed information NTG1140182

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM95_RS08895
• Genome accession: NZ_LS483397
• Coordinates: 1729600..1730535 (-)
• Length: 311 a.a.
• NCBI ID: WP_015911920.1
• Uniprot ID: -
• Organism: Streptococcus uberis strain NCTC3858
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1724600..1735535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM95_RS08865 (NCTC3858_01803)	rpsN	1724797..1725066 (+)	270	WP_015911914.1	30S ribosomal protein S14	-
DQM95_RS08870 (NCTC3858_01804)	tsaD	1725179..1726192 (-)	1014	WP_046389692.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
DQM95_RS08875 (NCTC3858_01805)	rimI	1726182..1726607 (-)	426	WP_046393730.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM95_RS08880 (NCTC3858_01806)	tsaB	1726615..1727307 (-)	693	WP_037592644.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM95_RS08885 (NCTC3858_01807)	-	1727589..1727819 (+)	231	WP_037592642.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM95_RS08890 (NCTC3858_01808)	rnjA	1727821..1729503 (+)	1683	WP_037592640.1	ribonuclease J1	-
DQM95_RS08895 (NCTC3858_01809)	amiF	1729600..1730535 (-)	936	WP_015911920.1	ABC transporter ATP-binding protein	Regulator
DQM95_RS08900 (NCTC3858_01810)	oppD	1730535..1731581 (-)	1047	WP_015911921.1	ABC transporter ATP-binding protein	Regulator
DQM95_RS08905 (NCTC3858_01811)	-	1731593..1732624 (-)	1032	WP_015911922.1	ABC transporter permease	-
DQM95_RS08910 (NCTC3858_01812)	-	1732634..1733548 (-)	915	WP_015911923.1	ABC transporter permease	-
DQM95_RS08915 (NCTC3858_01813)	-	1733623..1735281 (-)	1659	WP_037592637.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35253.09 Da
• Isoelectric Point: 6.1900

>NTDB_id=1140182 DQM95_RS08895 WP_015911920.1 1729600..1730535(-) (amiF) [Streptococcus uberis strain NCTC3858]
MTENRKKLVELKNVSLIFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGEKVSHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTKTKQEREDRVQELLEHVGLNRDHVTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQEDRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDIERQRVAEIYDPSAEDDGQEREMREITPGHFVLSTEAEAAEYKAKCQK

Nucleotide

• Length: 936 bp

>NTDB_id=1140182 DQM95_RS08895 WP_015911920.1 1729600..1730535(-) (amiF) [Streptococcus uberis strain NCTC3858]
ATGACTGAAAATCGTAAAAAATTAGTTGAGCTCAAAAATGTCTCTCTAATCTTTAACAAAGGCAAAAAAAATGAAGTGAA
AGCCATTAATAATGTTAGCTTTGACATTTATGAAGGCGAAGTATTTGGACTGGTTGGTGAATCAGGTTCAGGTAAAACAA
CTGTTGGACGTGCGATATTAAAACTTTATGATATCAATGAGGGTGAAATTATTTTCAATGGCGAAAAAGTTTCTCATCTC
AAAGGTAAGGAATTACATGAGTTCAGAAAGAATGCTCAAATGATTTTCCAAGATCCTCAAGCAAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCTGAAGGACTTGATATCCATGGCCTAACCAAAACGAAACAAGAGCGTGAAGATAGGGTTC
AAGAATTGTTAGAGCATGTTGGACTTAATAGAGACCACGTGACACGCTATCCACACGAATTCTCTGGAGGACAACGTCAA
CGTATTGGCATTGCTCGTGCCCTTGCCGTTCAACCTAAGTTTATCATCGCTGATGAACCAATTTCAGCACTGGATGTATC
CATTCAGGCACAGGTTGTTAACCTCATGCAAAAATTACAAGAAGATAGAGGTTTGACCTATCTCTTTATCGCCCACGATT
TGTCAATGGTTAAATACATTTCTGACCGAATTGGGGTTATGCATTGGGGTAAAATGCTAGAAATTGGAACATCTGATGAT
GTTTACAATAACCCAATCCATCCTTATACAAGAAGTTTGCTTTCAGCAATTCCAGAGCCAGATCCAGACATTGAGCGTCA
GCGTGTCGCAGAAATCTATGACCCAAGTGCTGAGGATGATGGACAAGAAAGAGAAATGCGTGAAATTACACCAGGACACT
TTGTTCTATCAACAGAAGCAGAAGCTGCTGAATACAAAGCAAAATGCCAAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.896	99.035	0.534