Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DQM65_RS10405 Genome accession   NZ_LS483392
Coordinates   2027632..2027979 (-) Length   115 a.a.
NCBI ID   WP_172454846.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2022632..2032979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS10385 (NCTC11931_02100) bioB 2023021..2024022 (-) 1002 WP_111691967.1 biotin synthase BioB -
  DQM65_RS10390 (NCTC11931_02101) thiQ 2024135..2024782 (-) 648 WP_111691968.1 thiamine ABC transporter ATP-binding protein -
  DQM65_RS10395 (NCTC11931_02102) thiP 2024766..2026382 (-) 1617 WP_111691969.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DQM65_RS10400 (NCTC11931_02103) thiB 2026387..2027385 (-) 999 WP_111691970.1 thiamine ABC transporter substrate binding subunit -
  DQM65_RS10405 (NCTC11931_02105) comE1/comEA 2027632..2027979 (-) 348 WP_172454846.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQM65_RS10410 (NCTC11931_02106) ispH 2028152..2029096 (-) 945 WP_061723832.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQM65_RS10415 (NCTC11931_02107) lspA 2029093..2029608 (-) 516 WP_042603649.1 signal peptidase II -
  DQM65_RS10420 (NCTC11931_02108) - 2029678..2031237 (-) 1560 WP_042603650.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12491.44 Da        Isoelectric Point: 8.0084

>NTDB_id=1140049 DQM65_RS10405 WP_172454846.1 2027632..2027979(-) (comE1/comEA) [Haemophilus influenzae strain NCTC11931]
MKLMKTLFISFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1140049 DQM65_RS10405 WP_172454846.1 2027632..2027979(-) (comE1/comEA) [Haemophilus influenzae strain NCTC11931]
ATGAAATTAATGAAAACATTATTCATTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

80.357

97.391

0.783
  comEA/comE1 Glaesserella parasuis strain SC1401

57.944

93.043

0.539

Multiple sequence alignment