Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DQM65_RS00285 Genome accession   NZ_LS483392
Coordinates   57604..58323 (-) Length   239 a.a.
NCBI ID   WP_021034776.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52604..63323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS00265 (NCTC11931_00050) nrdR 52713..53162 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  DQM65_RS00270 (NCTC11931_00051) recC 53245..56598 (-) 3354 WP_111690925.1 exodeoxyribonuclease V subunit gamma -
  DQM65_RS00275 (NCTC11931_00052) comQ 56644..56931 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  DQM65_RS00280 (NCTC11931_00053) comP 56924..57607 (-) 684 WP_111690926.1 DUF2572 family protein Machinery gene
  DQM65_RS00285 (NCTC11931_00054) comO 57604..58323 (-) 720 WP_021034776.1 type II secretion system protein J Machinery gene
  DQM65_RS00290 (NCTC11931_00055) comN 58323..58835 (-) 513 WP_050846671.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQM65_RS00295 (NCTC11931_00056) suhB 59035..59838 (+) 804 WP_111690927.1 inositol-1-monophosphatase -
  DQM65_RS00300 (NCTC11931_00057) nrfE 59947..61854 (+) 1908 WP_111690928.1 heme lyase NrfEFG subunit NrfE -
  DQM65_RS00305 (NCTC11931_00058) - 61854..62384 (+) 531 WP_111690929.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26792.10 Da        Isoelectric Point: 9.3691

>NTDB_id=1140018 DQM65_RS00285 WP_021034776.1 57604..58323(-) (comO) [Haemophilus influenzae strain NCTC11931]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQAPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1140018 DQM65_RS00285 WP_021034776.1 57604..58323(-) (comO) [Haemophilus influenzae strain NCTC11931]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGTTGTGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACAGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAGCTCCAAATATTAGTTATGAAACATCCCTTGTCGTTGCTCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment