Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DQM65_RS00290 Genome accession   NZ_LS483392
Coordinates   58323..58835 (-) Length   170 a.a.
NCBI ID   WP_050846671.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53323..63835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS00275 (NCTC11931_00052) comQ 56644..56931 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  DQM65_RS00280 (NCTC11931_00053) comP 56924..57607 (-) 684 WP_111690926.1 DUF2572 family protein Machinery gene
  DQM65_RS00285 (NCTC11931_00054) comO 57604..58323 (-) 720 WP_021034776.1 type II secretion system protein J Machinery gene
  DQM65_RS00290 (NCTC11931_00055) comN 58323..58835 (-) 513 WP_050846671.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DQM65_RS00295 (NCTC11931_00056) suhB 59035..59838 (+) 804 WP_111690927.1 inositol-1-monophosphatase -
  DQM65_RS00300 (NCTC11931_00057) nrfE 59947..61854 (+) 1908 WP_111690928.1 heme lyase NrfEFG subunit NrfE -
  DQM65_RS00305 (NCTC11931_00058) - 61854..62384 (+) 531 WP_111690929.1 DsbE family thiol:disulfide interchange protein -
  DQM65_RS00310 (NCTC11931_00059) nrfF 62381..63526 (+) 1146 WP_111690930.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19845.05 Da        Isoelectric Point: 8.7271

>NTDB_id=1140019 DQM65_RS00290 WP_050846671.1 58323..58835(-) (comN) [Haemophilus influenzae strain NCTC11931]
MQKGVTLVELLIGLAIISIALNFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLVTQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1140019 DQM65_RS00290 WP_050846671.1 58323..58835(-) (comN) [Haemophilus influenzae strain NCTC11931]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGCGCTGAATTTTGCCGTGCCATT
ATGGCAAACAGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGTTACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCGCATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

97.647

100

0.976

Multiple sequence alignment