Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQN61_RS10135 Genome accession   NZ_LS483391
Coordinates   54158..54253 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8320     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49158..59253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN61_RS00320 (NCTC8320_00064) - 50028..51368 (+) 1341 WP_011017237.1 hypothetical protein -
  DQN61_RS00325 (NCTC8320_00065) purB 51737..53029 (+) 1293 WP_011017238.1 adenylosuccinate lyase -
  DQN61_RS00330 (NCTC8320_00066) comR 53162..54073 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQN61_RS10135 (NCTC8320_00067) comS 54158..54253 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQN61_RS00335 (NCTC8320_00068) ruvB 54300..55298 (+) 999 WP_023079556.1 Holliday junction branch migration DNA helicase RuvB -
  DQN61_RS00340 (NCTC8320_00069) - 55436..55873 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQN61_RS00345 (NCTC8320_00070) - 55896..56297 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  DQN61_RS00350 (NCTC8320_00071) - 56294..58069 (+) 1776 WP_011017241.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1140013 DQN61_RS10135 WP_198462994.1 54158..54253(+) (comS) [Streptococcus pyogenes strain NCTC8320]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1140013 DQN61_RS10135 WP_198462994.1 54158..54253(+) (comS) [Streptococcus pyogenes strain NCTC8320]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment