Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM81_RS07570 Genome accession   NZ_LS483389
Coordinates   1460787..1461596 (-) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10879     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455787..1466596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM81_RS07560 (NCTC10879_01520) smc 1456113..1459652 (-) 3540 WP_111688333.1 chromosome segregation protein SMC -
  DQM81_RS07565 (NCTC10879_01521) rnc 1459653..1460345 (-) 693 WP_002990670.1 ribonuclease III -
  DQM81_RS07570 (NCTC10879_01522) vicX 1460787..1461596 (-) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQM81_RS07575 (NCTC10879_01523) vicK 1461600..1462952 (-) 1353 WP_063631274.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM81_RS07580 (NCTC10879_01524) vicR 1462945..1463655 (-) 711 WP_002985645.1 response regulator YycF Regulator
  DQM81_RS07585 (NCTC10879_01525) - 1463817..1464851 (-) 1035 WP_172451775.1 DUF3114 domain-containing protein -
  DQM81_RS07590 (NCTC10879_01526) - 1464907..1466154 (-) 1248 WP_111688334.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1139864 DQM81_RS07570 WP_002985641.1 1460787..1461596(-) (vicX) [Streptococcus pyogenes strain NCTC10879]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1139864 DQM81_RS07570 WP_002985641.1 1460787..1461596(-) (vicX) [Streptococcus pyogenes strain NCTC10879]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGTTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment