Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQM69_RS07835 Genome accession   NZ_LS483381
Coordinates   1626442..1627251 (-) Length   269 a.a.
NCBI ID   WP_109982705.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621442..1632251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS07815 (NCTC10921_01553) - 1621510..1621884 (+) 375 Protein_1486 hypothetical protein -
  DQM69_RS07820 (NCTC10921_01554) - 1622149..1622697 (-) 549 WP_021673681.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  DQM69_RS07825 (NCTC10921_01556) trkA 1623333..1624682 (+) 1350 WP_019777040.1 Trk system potassium transporter TrkA -
  DQM69_RS07830 (NCTC10921_01557) - 1624693..1626132 (+) 1440 WP_109982704.1 TrkH family potassium uptake protein -
  DQM69_RS07835 (NCTC10921_01558) vicX 1626442..1627251 (-) 810 WP_109982705.1 MBL fold metallo-hydrolase Regulator
  DQM69_RS07840 (NCTC10921_01559) vicK 1627244..1628605 (-) 1362 WP_019770277.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQM69_RS07845 (NCTC10921_01560) vicR 1628598..1629305 (-) 708 WP_109982820.1 response regulator YycF Regulator
  DQM69_RS07850 (NCTC10921_01561) - 1629531..1630295 (+) 765 WP_002960993.1 amino acid ABC transporter ATP-binding protein -
  DQM69_RS07855 (NCTC10921_01562) - 1630309..1631133 (+) 825 WP_019784970.1 transporter substrate-binding domain-containing protein -
  DQM69_RS07860 (NCTC10921_01563) - 1631149..1631856 (+) 708 WP_002960990.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30166.11 Da        Isoelectric Point: 5.7319

>NTDB_id=1139404 DQM69_RS07835 WP_109982705.1 1626442..1627251(-) (vicX) [Streptococcus sobrinus strain NCTC10921]
MTNEGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITSLLAEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYGMP
IYANEKTWQTMDAHNMIGKIDPEQKHTFERGKVMTLGDIDIESFGVSHDAIDPQFYRFMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGAYPWSLKQRILSDKGHLSNEDGSETMIRTIGNRTKKIYLGHLSKENNIKELAHMTMES
NLTQADFGVGHDFKVLDTSPDEATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1139404 DQM69_RS07835 WP_109982705.1 1626442..1627251(-) (vicX) [Streptococcus sobrinus strain NCTC10921]
ATGACTAATGAAGGTTTTAAATATAGTATTTTAGCATCGGGTTCCTCAGGGAACTCCTTTTACTTGGAAACGCCCAAGAA
GAAGCTCCTGATTGATGCAGGACTCTCAGGTAAGAAGATTACCAGTCTCCTTGCTGAAATTGACCGCAAGCCAGAAGATT
TGGATGCTATTTTGGTCACCCATGAGCACAAGGACCATATCCACGGTGTCGGGGTCTTGGCCCGTAAGTACGGCATGCCC
ATCTATGCCAACGAAAAGACCTGGCAGACCATGGATGCCCACAATATGATTGGTAAGATTGACCCCGAGCAAAAGCACAC
ATTTGAGCGAGGTAAGGTCATGACCCTCGGGGACATTGATATTGAGAGCTTCGGCGTCAGCCACGATGCCATTGACCCTC
AATTCTACCGCTTTATGAAGGACGATAAGAGCTTTGTTATGCTGACGGATACAGGCTATGTGAGTGATCGTATGGCTGGT
CTAATTGAAAATGCGGACGGCTACCTGATTGAGTCCAACCACGATATTGAAATTCTGCGCTCAGGCGCTTATCCTTGGAG
TCTCAAGCAGCGGATTCTTTCGGACAAGGGCCACCTCTCTAATGAGGACGGCTCGGAAACCATGATTCGCACCATCGGTA
ACCGCACCAAGAAGATTTATCTTGGCCACCTCAGTAAGGAAAATAACATCAAGGAGCTGGCCCACATGACCATGGAATCA
AATTTGACACAAGCTGATTTTGGCGTTGGCCATGACTTCAAAGTTTTGGACACTTCGCCGGATGAAGCAACTCCTCTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

79.554

100

0.796

Multiple sequence alignment