Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DQM69_RS05535 Genome accession   NZ_LS483381
Coordinates   1130263..1130691 (-) Length   142 a.a.
NCBI ID   WP_002959424.1    Uniprot ID   U2J2W6
Organism   Streptococcus sobrinus strain NCTC10921     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125263..1135691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS05520 (NCTC10921_01088) - 1125695..1126330 (-) 636 WP_002959419.1 ABC transporter permease -
  DQM69_RS05525 (NCTC10921_01089) rcrQ 1126688..1128436 (-) 1749 WP_109982607.1 ABC transporter ATP-binding protein Regulator
  DQM69_RS05530 (NCTC10921_01090) rcrP 1128426..1130255 (-) 1830 WP_109982608.1 ABC transporter ATP-binding protein Regulator
  DQM69_RS05535 (NCTC10921_01091) rcrR 1130263..1130691 (-) 429 WP_002959424.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM69_RS05540 (NCTC10921_01092) - 1130913..1133009 (+) 2097 WP_109982609.1 surface-anchored 5'-nucleotidase -
  DQM69_RS05545 (NCTC10921_01093) - 1133206..1133994 (-) 789 WP_002959426.1 ABC transporter permease subunit -
  DQM69_RS05550 (NCTC10921_01094) - 1133975..1134820 (-) 846 WP_002959428.1 ABC transporter ATP-binding protein -
  DQM69_RS05555 (NCTC10921_01095) - 1134820..1135263 (-) 444 WP_002959430.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16696.60 Da        Isoelectric Point: 10.3649

>NTDB_id=1139399 DQM69_RS05535 WP_002959424.1 1130263..1130691(-) (rcrR) [Streptococcus sobrinus strain NCTC10921]
MKDPFDIFRTFINTMETSVQELAKKHGVEHLAGPQGFTVSYLFENRDKEIFIKDIEERLRISKSVASNLIKRMEKNGFIQ
VKPSLKDKRYKQIVLTELGLDKAEKIKVFRSKIEEIILKDIDKKNLEVARRVFLQIKTNLEK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1139399 DQM69_RS05535 WP_002959424.1 1130263..1130691(-) (rcrR) [Streptococcus sobrinus strain NCTC10921]
ATGAAAGATCCCTTTGACATTTTCAGAACTTTCATCAATACTATGGAAACTAGTGTCCAAGAGTTGGCCAAAAAGCATGG
GGTGGAGCATTTAGCTGGCCCCCAAGGCTTTACGGTCTCTTATCTTTTTGAAAACCGAGACAAAGAAATTTTCATAAAAG
ACATTGAAGAGAGGCTAAGAATTTCCAAATCTGTCGCTAGTAATCTCATCAAACGGATGGAGAAGAATGGCTTTATCCAA
GTCAAGCCTTCCCTCAAGGACAAACGCTATAAGCAGATTGTTCTGACAGAACTTGGCCTTGATAAGGCTGAGAAGATTAA
GGTATTCCGTTCCAAAATCGAAGAGATTATTCTTAAGGATATTGATAAGAAGAATCTGGAAGTTGCCCGCCGGGTTTTTT
TGCAAATCAAAACTAATTTAGAAAAGTAG

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(46-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2J2W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

64.789

100

0.648

Multiple sequence alignment