Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQM69_RS05530 Genome accession   NZ_LS483381
Coordinates   1128426..1130255 (-) Length   609 a.a.
NCBI ID   WP_109982608.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123426..1135255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS05510 (NCTC10921_01086) - 1124035..1124784 (-) 750 WP_019770237.1 ABC transporter ATP-binding protein -
  DQM69_RS05515 (NCTC10921_01087) - 1124791..1125705 (-) 915 WP_002959417.1 glycine betaine ABC transporter substrate-binding protein -
  DQM69_RS05520 (NCTC10921_01088) - 1125695..1126330 (-) 636 WP_002959419.1 ABC transporter permease -
  DQM69_RS05525 (NCTC10921_01089) rcrQ 1126688..1128436 (-) 1749 WP_109982607.1 ABC transporter ATP-binding protein Regulator
  DQM69_RS05530 (NCTC10921_01090) rcrP 1128426..1130255 (-) 1830 WP_109982608.1 ABC transporter ATP-binding protein Regulator
  DQM69_RS05535 (NCTC10921_01091) rcrR 1130263..1130691 (-) 429 WP_002959424.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DQM69_RS05540 (NCTC10921_01092) - 1130913..1133009 (+) 2097 WP_109982609.1 surface-anchored 5'-nucleotidase -
  DQM69_RS05545 (NCTC10921_01093) - 1133206..1133994 (-) 789 WP_002959426.1 ABC transporter permease subunit -
  DQM69_RS05550 (NCTC10921_01094) - 1133975..1134820 (-) 846 WP_002959428.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 67875.80 Da        Isoelectric Point: 9.7581

>NTDB_id=1139398 DQM69_RS05530 WP_109982608.1 1128426..1130255(-) (rcrP) [Streptococcus sobrinus strain NCTC10921]
MFKIFKRLSAKEWGMIILSTIFILLAVWMDLKTPEYMSKITTLLQNKGTTTSDIMDPGSKMLLFSFGSFLMAVFVGFLAA
RTAASFTTRLRSDIFNQVADYSQAEIKRFSVPSLLTRTTNDLTQLQIMITMGMQVVTRGPIMAIWALTKIWGKSGSWTQA
VGVAVLIVLILLSVLLFVAFPRQRKVQGLTDALNSTTRESLTGVRVVRAYNAEDYQDKKFRQENESLTKLNLFVYRLMSL
MNPVMTMVFSGLTLAIYWIGAHLLNDVKVPTVDKTSPMVMKMVAEAAKAVKDRVSIFSDMVVFSSYAMQVVIGFMMMVAI
FIILPRALVSAKRINEVLALSPSVKFKNQSKPDNGQKGQVEVHDVSFRYSKNSAAAIEHVSFKAEKGQTVAFIGSTGSGK
STLVNLIPRFYDATEGWIKVDGVKVEDYSHDDLNNKVGYIPQTAVLFSGTIRSNMRFGRSAQGHLSDDDIWEALELAQVK
DFVESKDKGLDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELNKKTSDLTKLIVAQRIS
TIMDADQILVLDQGKVVGQGTHKELLASNSVYQEIAYSQLSKEELENED

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=1139398 DQM69_RS05530 WP_109982608.1 1128426..1130255(-) (rcrP) [Streptococcus sobrinus strain NCTC10921]
ATGTTCAAAATTTTTAAACGCTTAAGCGCAAAAGAATGGGGCATGATTATTCTGTCGACCATTTTTATTTTGCTGGCGGT
TTGGATGGATTTGAAGACACCTGAATACATGTCTAAAATCACCACCCTCCTGCAAAATAAGGGGACGACAACCTCTGACA
TCATGGACCCAGGTTCTAAAATGCTCCTCTTCTCCTTTGGTAGCTTTTTGATGGCTGTCTTTGTTGGTTTCCTGGCTGCG
AGAACGGCGGCTAGTTTCACGACTCGCTTGCGCTCTGATATTTTCAACCAAGTGGCCGACTATTCGCAAGCCGAAATCAA
ACGGTTCTCCGTGCCCAGTCTCTTGACCAGGACCACCAATGACCTGACCCAGCTACAAATCATGATTACCATGGGGATGC
AGGTGGTTACTCGTGGGCCAATTATGGCCATCTGGGCTTTGACCAAGATTTGGGGCAAGAGTGGCTCCTGGACTCAGGCA
GTTGGAGTAGCGGTTCTAATCGTTCTCATTCTCTTGTCTGTCCTTCTCTTTGTTGCCTTCCCACGTCAACGTAAGGTTCA
AGGCTTGACCGATGCCCTCAACTCAACCACTCGGGAATCTCTAACGGGTGTTCGGGTTGTTCGGGCCTACAATGCTGAGG
ATTACCAGGACAAGAAGTTCCGTCAAGAAAATGAAAGCTTGACCAAACTCAACCTCTTTGTTTACCGGCTCATGTCTCTG
ATGAACCCAGTTATGACCATGGTTTTCAGCGGTTTGACGCTAGCGATTTATTGGATTGGCGCCCATCTGCTCAACGACGT
CAAGGTTCCAACAGTGGATAAGACCAGCCCAATGGTCATGAAGATGGTAGCAGAAGCGGCCAAGGCTGTTAAGGACCGGG
TTTCGATCTTTTCTGATATGGTTGTCTTCTCATCTTATGCCATGCAGGTCGTTATTGGTTTCATGATGATGGTTGCCATC
TTCATTATCCTGCCACGGGCTCTGGTGTCTGCTAAGCGGATTAATGAAGTTCTGGCTCTCAGTCCATCTGTTAAGTTTAA
GAACCAATCTAAGCCTGACAATGGTCAAAAGGGTCAAGTGGAAGTTCACGATGTTTCCTTCCGTTACAGCAAGAATTCTG
CTGCGGCTATCGAGCACGTTTCTTTCAAGGCTGAAAAAGGTCAAACCGTGGCCTTTATCGGGTCGACTGGTTCTGGTAAA
TCGACCCTGGTCAATCTGATTCCTCGGTTCTATGATGCCACCGAAGGTTGGATCAAGGTTGACGGTGTCAAGGTTGAAGA
CTACAGCCACGATGACCTCAACAATAAGGTCGGTTATATCCCGCAAACCGCTGTCCTCTTTAGCGGTACCATCCGTTCCA
ATATGCGGTTTGGTCGGAGTGCTCAGGGTCACTTGAGCGATGATGACATCTGGGAGGCTCTCGAATTGGCTCAAGTCAAG
GACTTTGTCGAAAGTAAGGACAAGGGCCTGGATACAGAAGTAGCCCAAGGTGGGACCAACTTCTCTGGTGGTCAAAAGCA
ACGTTTGGCTATTGCCCGTGCCTTGGCTCGTAAACCAGAAATCCTTATCTTTGATGATTCCTTCTCAGCATTGGACTACA
AGACAGACCGCATCCTGCGTGAGGAACTCAATAAGAAGACTAGCGACTTGACCAAGTTGATTGTCGCTCAACGGATTTCA
ACCATTATGGACGCTGACCAAATCTTGGTTCTGGACCAAGGTAAGGTGGTCGGTCAAGGTACCCACAAGGAACTCTTGGC
CTCAAATTCTGTCTACCAAGAAATTGCCTATTCACAACTTTCAAAGGAGGAATTGGAAAATGAAGACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(378-527)

ABC transporter transmembrane region (ABC_membrane)

(16-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

83.361

99.672

0.831

Multiple sequence alignment