Detailed information
Bioinformatically predicted
Overview
| Name | oppD | Type | Regulator |
| Locus tag | DQM69_RS00800 | Genome accession | NZ_LS483381 |
| Coordinates | 136414..137463 (+) | Length | 349 a.a. |
| NCBI ID | WP_019771160.1 | Uniprot ID | - |
| Organism | Streptococcus sobrinus strain NCTC10921 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 125488..170667 | 136414..137463 | within | 0 |
Gene organization within MGE regions
Location: 125488..170667
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM69_RS00780 (NCTC10921_00158) | rpoC | 128745..132383 (+) | 3639 | WP_109982367.1 | DNA-directed RNA polymerase subunit beta' | - |
| DQM69_RS00785 (NCTC10921_00159) | - | 132677..134341 (+) | 1665 | WP_021673621.1 | peptide ABC transporter substrate-binding protein | - |
| DQM69_RS00790 (NCTC10921_00160) | - | 134446..135360 (+) | 915 | WP_019771159.1 | ABC transporter permease | - |
| DQM69_RS00795 (NCTC10921_00161) | - | 135372..136403 (+) | 1032 | WP_109982368.1 | ABC transporter permease | - |
| DQM69_RS00800 (NCTC10921_00162) | oppD | 136414..137463 (+) | 1050 | WP_019771160.1 | ABC transporter ATP-binding protein | Regulator |
| DQM69_RS00805 (NCTC10921_00163) | amiF | 137460..138383 (+) | 924 | WP_002999065.1 | ABC transporter ATP-binding protein | Regulator |
| DQM69_RS00810 (NCTC10921_00164) | - | 138620..140305 (-) | 1686 | WP_109982369.1 | MFS transporter | - |
| DQM69_RS00815 (NCTC10921_00165) | - | 140437..140958 (+) | 522 | WP_019781803.1 | PadR family transcriptional regulator | - |
| DQM69_RS00820 (NCTC10921_00166) | - | 140971..141279 (+) | 309 | WP_019777335.1 | LlsX family protein | - |
| DQM69_RS00830 (NCTC10921_00167) | - | 141639..142205 (+) | 567 | WP_019781805.1 | TMEM175 family protein | - |
| DQM69_RS10430 (NCTC10921_00168) | - | 142559..142702 (-) | 144 | WP_002959475.1 | hypothetical protein | - |
| DQM69_RS00835 (NCTC10921_00169) | - | 142692..142982 (-) | 291 | WP_002997623.1 | hypothetical protein | - |
| DQM69_RS00840 (NCTC10921_00170) | - | 143187..143909 (+) | 723 | WP_019776886.1 | ABC transporter ATP-binding protein | - |
| DQM69_RS00845 (NCTC10921_00171) | - | 143914..145060 (+) | 1147 | Protein_127 | ABC transporter permease | - |
| DQM69_RS00850 (NCTC10921_00172) | - | 145284..145904 (+) | 621 | WP_002959483.1 | TetR/AcrR family transcriptional regulator | - |
| DQM69_RS00855 (NCTC10921_00173) | - | 146082..146344 (-) | 263 | Protein_129 | type II toxin-antitoxin system YafQ family toxin | - |
| DQM69_RS00860 (NCTC10921_00174) | - | 146348..146629 (-) | 282 | WP_002959487.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| DQM69_RS00865 (NCTC10921_00175) | - | 146786..147652 (-) | 867 | WP_002959489.1 | LysR family transcriptional regulator | - |
| DQM69_RS00870 (NCTC10921_00176) | - | 147763..148623 (+) | 861 | WP_002959490.1 | aldo/keto reductase | - |
| DQM69_RS00875 (NCTC10921_00177) | - | 148723..149085 (-) | 363 | WP_002959493.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| DQM69_RS00880 (NCTC10921_00178) | - | 149446..151830 (-) | 2385 | WP_019785320.1 | HAD-IC family P-type ATPase | - |
| DQM69_RS00885 (NCTC10921_00179) | - | 152050..152418 (+) | 369 | WP_019781971.1 | DUF1033 family protein | - |
| DQM69_RS00890 (NCTC10921_00180) | comGA/cglA | 152844..153791 (+) | 948 | WP_019777327.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQM69_RS00895 (NCTC10921_00181) | comYB | 153715..154758 (+) | 1044 | WP_002959504.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQM69_RS00900 (NCTC10921_00182) | comYC | 154755..155081 (+) | 327 | WP_019770073.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQM69_RS00905 (NCTC10921_00183) | comYD | 155035..155469 (+) | 435 | WP_254051091.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQM69_RS00910 (NCTC10921_00184) | comYE | 155441..155734 (+) | 294 | WP_002959510.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DQM69_RS00915 (NCTC10921_00185) | comYF | 155718..156155 (+) | 438 | WP_019781940.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQM69_RS00920 (NCTC10921_00186) | comGG | 156133..156594 (+) | 462 | WP_019785527.1 | competence type IV pilus minor pilin ComGG | - |
| DQM69_RS00930 (NCTC10921_00188) | - | 156796..157062 (+) | 267 | WP_002959516.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DQM69_RS00935 (NCTC10921_00189) | - | 157049..157324 (+) | 276 | WP_109982370.1 | helix-turn-helix domain-containing protein | - |
| DQM69_RS00940 (NCTC10921_00190) | comYH | 157423..158376 (+) | 954 | WP_019771347.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQM69_RS00945 (NCTC10921_00191) | - | 158439..159635 (+) | 1197 | WP_019771614.1 | acetate kinase | - |
| DQM69_RS00950 (NCTC10921_00192) | - | 160113..161018 (+) | 906 | WP_019769860.1 | LysR family transcriptional regulator | - |
| DQM69_RS00955 (NCTC10921_00193) | - | 161196..161462 (+) | 267 | WP_002959526.1 | ACT domain-containing protein | - |
| DQM69_RS00960 (NCTC10921_00194) | - | 161474..162811 (+) | 1338 | WP_002959528.1 | PFL family protein | - |
| DQM69_RS00965 | - | 163050..163352 (-) | 303 | Protein_150 | hypothetical protein | - |
| DQM69_RS00970 (NCTC10921_00195) | - | 163379..164314 (-) | 936 | WP_111687988.1 | IS30 family transposase | - |
| DQM69_RS00975 (NCTC10921_00196) | - | 164505..164936 (-) | 432 | WP_002961167.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DQM69_RS00980 (NCTC10921_00197) | - | 165075..165776 (+) | 702 | WP_002961168.1 | histidine phosphatase family protein | - |
| DQM69_RS00985 (NCTC10921_00198) | - | 165763..166530 (+) | 768 | WP_002961169.1 | M15 family metallopeptidase | - |
| DQM69_RS00990 (NCTC10921_00199) | - | 166697..167281 (+) | 585 | WP_002961170.1 | glycoside hydrolase family 73 protein | - |
| DQM69_RS00995 (NCTC10921_00200) | hrcA | 167448..168482 (+) | 1035 | WP_002961171.1 | heat-inducible transcriptional repressor HrcA | - |
| DQM69_RS01000 (NCTC10921_00201) | grpE | 168502..169053 (+) | 552 | WP_019790544.1 | nucleotide exchange factor GrpE | - |
| DQM69_RS10545 | - | 169118..169318 (+) | 201 | WP_162564139.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 349 a.a. Molecular weight: 38884.16 Da Isoelectric Point: 4.6620
>NTDB_id=1139376 DQM69_RS00800 WP_019771160.1 136414..137463(+) (oppD) [Streptococcus sobrinus strain NCTC10921]
MSKEEILSVKNLHVNFHTYAGDVKAIRNVNFELYKGETLAIVGESGSGKSVTTRTLMGLSAKNAEVKGDIQFKGRSLNDL
VEKDWVDVRGNEIAMIFQDPMTSLDPTMKIWKQITEPILIHDEEMEFDQAFEIAVDLMEKVGIPNAREHANDYPHQWSGG
MRQRAVIAIALAANPEILIADEPTTALDVTIQAQILHLMKDIQKQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGT
VDEVFYNPQHPYTWGLLGSMPTTGTQSGSLQAIPGTPPDLLNPPKGDAFAARNAFALDIDHEEEPPMFKVSDSHYAATWL
LDERAPQVTPPDFIQKRWQDWQALEGRQK
MSKEEILSVKNLHVNFHTYAGDVKAIRNVNFELYKGETLAIVGESGSGKSVTTRTLMGLSAKNAEVKGDIQFKGRSLNDL
VEKDWVDVRGNEIAMIFQDPMTSLDPTMKIWKQITEPILIHDEEMEFDQAFEIAVDLMEKVGIPNAREHANDYPHQWSGG
MRQRAVIAIALAANPEILIADEPTTALDVTIQAQILHLMKDIQKQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGT
VDEVFYNPQHPYTWGLLGSMPTTGTQSGSLQAIPGTPPDLLNPPKGDAFAARNAFALDIDHEEEPPMFKVSDSHYAATWL
LDERAPQVTPPDFIQKRWQDWQALEGRQK
Nucleotide
Download Length: 1050 bp
>NTDB_id=1139376 DQM69_RS00800 WP_019771160.1 136414..137463(+) (oppD) [Streptococcus sobrinus strain NCTC10921]
ATGTCAAAAGAAGAAATTTTAAGTGTTAAGAACCTCCACGTCAATTTCCACACCTACGCTGGGGATGTCAAGGCTATTCG
CAATGTCAATTTCGAGCTTTACAAGGGGGAAACTCTGGCCATCGTTGGCGAATCAGGTTCCGGAAAGTCCGTGACCACTC
GGACCCTCATGGGCTTGTCAGCCAAGAATGCTGAGGTCAAGGGGGACATTCAGTTCAAGGGTCGCAGTCTTAATGACCTA
GTCGAAAAAGACTGGGTGGATGTGCGTGGCAATGAGATTGCCATGATTTTCCAGGACCCCATGACGAGTCTGGATCCCAC
CATGAAGATTTGGAAGCAGATTACTGAGCCTATCCTCATTCATGATGAGGAGATGGAATTTGACCAGGCCTTTGAAATCG
CTGTTGATTTGATGGAGAAGGTTGGGATTCCTAATGCGCGTGAACACGCTAATGATTACCCCCACCAATGGTCTGGAGGA
ATGCGGCAACGGGCTGTCATTGCCATTGCCCTAGCTGCTAATCCAGAAATCCTCATTGCCGATGAACCGACAACGGCTCT
GGATGTGACCATTCAGGCACAGATTTTGCATCTGATGAAGGACATTCAAAAGCAGACCGAGAGCTCGATTATCTTTATCA
CCCATGATTTGGGTGTGGTGGCTGGCATGGCTGACCGAGTGGCTGTCATGTACGCTGGTAAGATTGTTGAGTACGGGACC
GTTGATGAGGTATTCTACAATCCTCAACACCCTTACACTTGGGGCCTGCTAGGCTCTATGCCGACAACCGGCACCCAGTC
TGGCAGCCTGCAAGCTATTCCAGGAACGCCACCAGACTTGCTCAATCCACCCAAGGGTGATGCTTTTGCGGCCAGAAATG
CCTTTGCTCTAGATATTGACCATGAGGAAGAGCCGCCAATGTTTAAGGTATCTGATAGCCACTATGCAGCCACCTGGCTC
TTGGATGAGCGAGCACCCCAAGTGACCCCGCCAGACTTTATCCAAAAACGTTGGCAAGACTGGCAAGCATTAGAAGGGAG
ACAAAAATGA
ATGTCAAAAGAAGAAATTTTAAGTGTTAAGAACCTCCACGTCAATTTCCACACCTACGCTGGGGATGTCAAGGCTATTCG
CAATGTCAATTTCGAGCTTTACAAGGGGGAAACTCTGGCCATCGTTGGCGAATCAGGTTCCGGAAAGTCCGTGACCACTC
GGACCCTCATGGGCTTGTCAGCCAAGAATGCTGAGGTCAAGGGGGACATTCAGTTCAAGGGTCGCAGTCTTAATGACCTA
GTCGAAAAAGACTGGGTGGATGTGCGTGGCAATGAGATTGCCATGATTTTCCAGGACCCCATGACGAGTCTGGATCCCAC
CATGAAGATTTGGAAGCAGATTACTGAGCCTATCCTCATTCATGATGAGGAGATGGAATTTGACCAGGCCTTTGAAATCG
CTGTTGATTTGATGGAGAAGGTTGGGATTCCTAATGCGCGTGAACACGCTAATGATTACCCCCACCAATGGTCTGGAGGA
ATGCGGCAACGGGCTGTCATTGCCATTGCCCTAGCTGCTAATCCAGAAATCCTCATTGCCGATGAACCGACAACGGCTCT
GGATGTGACCATTCAGGCACAGATTTTGCATCTGATGAAGGACATTCAAAAGCAGACCGAGAGCTCGATTATCTTTATCA
CCCATGATTTGGGTGTGGTGGCTGGCATGGCTGACCGAGTGGCTGTCATGTACGCTGGTAAGATTGTTGAGTACGGGACC
GTTGATGAGGTATTCTACAATCCTCAACACCCTTACACTTGGGGCCTGCTAGGCTCTATGCCGACAACCGGCACCCAGTC
TGGCAGCCTGCAAGCTATTCCAGGAACGCCACCAGACTTGCTCAATCCACCCAAGGGTGATGCTTTTGCGGCCAGAAATG
CCTTTGCTCTAGATATTGACCATGAGGAAGAGCCGCCAATGTTTAAGGTATCTGATAGCCACTATGCAGCCACCTGGCTC
TTGGATGAGCGAGCACCCCAAGTGACCCCGCCAGACTTTATCCAAAAACGTTGGCAAGACTGGCAAGCATTAGAAGGGAG
ACAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| oppD | Streptococcus mutans UA159 |
79.885 |
99.713 |
0.797 |
| amiE | Streptococcus salivarius strain HSISS4 |
53.602 |
99.427 |
0.533 |
| amiE | Streptococcus thermophilus LMG 18311 |
54.464 |
96.275 |
0.524 |
| amiE | Streptococcus thermophilus LMD-9 |
54.464 |
96.275 |
0.524 |