Detailed information NTG1139339

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: DQM75_RS05385
• Genome accession: NZ_LS483380
• Coordinates: 1125200..1126429 (-)
• Length: 409 a.a.
• NCBI ID: WP_012677889.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC11824
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1120200..1131429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM75_RS05370 (NCTC11824_01075)	hupY	1121216..1124218 (-)	3003	WP_111692486.1	leucine-rich repeat adhesin HupY/LrrG	-
DQM75_RS05380 (NCTC11824_01077)	yihA	1124591..1125190 (-)	600	WP_111692488.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
DQM75_RS05385 (NCTC11824_01078)	clpX	1125200..1126429 (-)	1230	WP_012677889.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
DQM75_RS05390 (NCTC11824_01079)	-	1126465..1126635 (-)	171	WP_012515696.1	hypothetical protein	-
DQM75_RS05395 (NCTC11824_01080)	-	1126655..1127152 (-)	498	WP_111692489.1	dihydrofolate reductase	-
DQM75_RS05400 (NCTC11824_01081)	-	1127233..1128072 (-)	840	WP_043025902.1	thymidylate synthase	-
DQM75_RS05405 (NCTC11824_01082)	-	1128257..1129432 (+)	1176	WP_043025905.1	hydroxymethylglutaryl-CoA synthase	-
DQM75_RS05410 (NCTC11824_01083)	-	1129419..1130702 (+)	1284	WP_201306275.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45197.77 Da
• Isoelectric Point: 4.5726

>NTDB_id=1139339 DQM75_RS05385 WP_012677889.1 1125200..1126429(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=1139339 DQM75_RS05385 WP_012677889.1 1125200..1126429(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGATGATGATGATGT
GGATTTGCAGAAGTCCAATATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTGGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGTAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAATCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577