Detailed information NTG1139159

Bioinformatically predicted

Overview

• Name: lytF
• Type: Regulator
• Locus tag: DQM54_RS10440
• Genome accession: NZ_LS483375
• Coordinates: 2102935..2104584 (+)
• Length: 549 a.a.
• NCBI ID: WP_111724243.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain NCTC3165
• Function: cell lysis (predicted from homology) Cell lysis

Genomic Context

Location: 2097935..2109584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM54_RS10410 (NCTC3165_02072)	-	2098079..2098306 (-)	228	WP_082307320.1	phosphoribosylaminoimidazole carboxylase	-
DQM54_RS10415 (NCTC3165_02073)	-	2098402..2098602 (-)	201	WP_223349043.1	hypothetical protein	-
DQM54_RS10420 (NCTC3165_02074)	purK	2098592..2099683 (-)	1092	WP_045504739.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
DQM54_RS10425 (NCTC3165_02075)	purE	2099670..2100158 (-)	489	WP_045504741.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
DQM54_RS10430 (NCTC3165_02076)	-	2100178..2101371 (-)	1194	WP_111724241.1	ATP-grasp domain-containing protein	-
DQM54_RS10435 (NCTC3165_02077)	purD	2101431..2102690 (-)	1260	WP_111724242.1	phosphoribosylamine--glycine ligase	-
DQM54_RS10440 (NCTC3165_02078)	lytF	2102935..2104584 (+)	1650	WP_111724243.1	GBS Bsp-like repeat-containing protein	Regulator
DQM54_RS10445 (NCTC3165_02079)	comB	2104703..2106061 (-)	1359	WP_111724244.1	competence pheromone export protein ComB	Regulator
DQM54_RS10450 (NCTC3165_02080)	comA	2106071..2108224 (-)	2154	WP_111724245.1	peptide cleavage/export ABC transporter ComA	Regulator
DQM54_RS10455 (NCTC3165_02081)	-	2108926..2109135 (-)	210	WP_111724246.1	hypothetical protein	-

Sequence

Protein

• Length: 549 a.a.
• Molecular weight: 60413.07 Da
• Isoelectric Point: 9.2909

>NTDB_id=1139159 DQM54_RS10440 WP_111724243.1 2102935..2104584(+) (lytF) [Streptococcus gordonii strain NCTC3165]
MKKYKNFLLLSATLLTSLSAPLAAANEQFSPSQLTAMTSEVSVQLEGQTAIVQYQPTTAQEAYPIQHAVWSEEGGQDDIV
WYSADQSTTRIDLSQHKGQGKFLIETYLNVNGVKYHLSSKSVFLNKPVQSAEKTVPEQQNSTSSNNATPQAPAEQKPTNP
APSPAPAPATNRVENPRNSYQKVEDRNKSLPPQKVADPKATPPQAKPNNNKPLQASAARVPAEPVRDSKPLISITNINKE
NGTYTVRVQESPYSKKIKSVQVPIWSTSNQSNLKWYEASQTGNGSFSVQFDIRNHQQLYGNYINHVYITYEDGSRAGYVA
ENVNLPQPAPQPLTPSLQVVHKGQSNYQVILQNSFGDGHILFPIWSDINGQDDLRWYTANSLGNGRYSLDFNANNHIGDG
LYHVHVYRQSGGKVTGVMASNFQVTRPTVAVRKPLNHTTDPSNTYPVGECTWGAKALAPWAGNWWGNGGDWAASARRAGF
RVGSTPQVGAIACWTDGGYGHVGVVTHVDSHKRIQIQESNYAGQRYIANFRGWFDPTIAQGTVSYIYPN

Nucleotide

• Length: 1650 bp

>NTDB_id=1139159 DQM54_RS10440 WP_111724243.1 2102935..2104584(+) (lytF) [Streptococcus gordonii strain NCTC3165]
ATGAAAAAATACAAAAATTTCTTACTGCTTTCAGCAACCTTGCTGACCTCACTATCCGCTCCCTTAGCTGCAGCGAATGA
ACAGTTTAGCCCATCCCAGCTGACGGCTATGACCAGCGAAGTTTCCGTTCAGCTTGAAGGACAAACAGCGATTGTTCAGT
ATCAACCGACCACTGCGCAAGAAGCTTACCCCATCCAACATGCCGTCTGGTCTGAGGAGGGAGGCCAAGACGATATTGTC
TGGTATTCAGCTGATCAAAGTACGACCAGGATTGACTTGTCTCAGCACAAGGGCCAAGGCAAATTTCTCATCGAGACTTA
TCTCAATGTGAATGGTGTCAAATATCACTTGAGCAGTAAATCGGTCTTTCTAAACAAGCCGGTTCAATCAGCCGAAAAAA
CTGTCCCTGAACAACAAAACAGCACTTCGTCTAACAATGCTACACCTCAAGCGCCTGCTGAGCAAAAGCCAACTAACCCA
GCACCTTCTCCAGCTCCGGCCCCCGCGACCAATAGAGTTGAAAACCCTCGGAACTCCTATCAAAAAGTCGAAGATCGAAA
CAAATCTCTTCCTCCTCAAAAAGTAGCTGACCCAAAGGCGACGCCCCCTCAGGCAAAGCCAAACAATAACAAACCTCTGC
AAGCTTCAGCTGCTAGAGTACCGGCAGAGCCTGTCAGAGACAGCAAGCCACTCATCAGTATTACCAACATTAATAAGGAA
AATGGAACCTATACCGTAAGGGTCCAAGAAAGTCCGTATTCCAAGAAAATTAAAAGTGTGCAGGTGCCTATTTGGAGCAC
CTCTAATCAAAGCAATCTTAAATGGTATGAGGCTTCACAAACAGGCAACGGAAGCTTCTCCGTTCAATTCGATATCCGAA
ATCACCAGCAGCTTTACGGCAACTATATCAATCACGTCTACATTACTTATGAAGACGGTAGCCGAGCTGGCTATGTCGCT
GAAAATGTCAATCTTCCTCAGCCAGCACCCCAACCACTAACTCCGAGTCTGCAAGTGGTTCATAAAGGCCAATCAAATTA
TCAAGTTATCTTACAAAATAGTTTCGGTGACGGCCATATCCTCTTCCCCATCTGGTCAGATATTAATGGTCAAGACGATC
TCCGCTGGTATACAGCCAACTCTCTAGGTAATGGGCGCTATTCGTTAGATTTCAACGCCAATAATCATATCGGTGACGGT
CTCTATCATGTCCATGTCTATCGACAATCTGGTGGGAAAGTAACGGGTGTCATGGCTTCTAATTTTCAAGTGACACGTCC
AACAGTAGCTGTGAGAAAACCTCTTAACCATACGACCGACCCAAGTAACACCTACCCTGTTGGTGAATGTACATGGGGTG
CCAAGGCTCTCGCTCCTTGGGCAGGAAACTGGTGGGGAAATGGTGGGGACTGGGCAGCCAGTGCTCGCCGAGCAGGATTC
CGTGTAGGATCCACACCTCAGGTCGGAGCCATTGCCTGCTGGACTGACGGTGGATACGGACATGTCGGCGTCGTCACGCA
TGTTGATTCACATAAGCGTATCCAAATTCAGGAATCCAACTACGCTGGACAGCGCTATATCGCTAATTTCCGTGGCTGGT
TTGACCCAACCATCGCTCAGGGCACGGTTTCCTATATCTACCCAAATTAA

Domains

Predicted by InterproScan.

• CHAP domain (CHAP) (443-520)

• GBS Bsp-like repeat (GBS_Bsp-like) (344-414)

• GBS Bsp-like repeat (GBS_Bsp-like) (234-319)

• GBS Bsp-like repeat (GBS_Bsp-like) (59-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
lytF	Streptococcus gordonii strain NCTC7865	97.814	100	0.978
lytF	Streptococcus gordonii str. Challis substr. CH1	96.175	100	0.962