Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM54_RS07695 Genome accession   NZ_LS483375
Coordinates   1554504..1556306 (-) Length   600 a.a.
NCBI ID   WP_111723972.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549504..1561306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS07680 (NCTC3165_01529) - 1551969..1552454 (-) 486 WP_061602167.1 LURP-one-related/scramblase family protein -
  DQM54_RS07685 (NCTC3165_01531) prsA 1552684..1553613 (-) 930 WP_096755052.1 peptidylprolyl isomerase PrsA -
  DQM54_RS07690 (NCTC3165_01532) - 1553816..1554502 (-) 687 WP_111723971.1 O-methyltransferase -
  DQM54_RS07695 (NCTC3165_01533) pepF 1554504..1556306 (-) 1803 WP_111723972.1 oligoendopeptidase F Regulator
  DQM54_RS07700 (NCTC3165_01534) coiA 1556462..1557415 (-) 954 WP_111723973.1 competence protein CoiA Machinery gene
  DQM54_RS07705 (NCTC3165_01535) - 1557501..1558673 (-) 1173 WP_111723974.1 MFS transporter -
  DQM54_RS07710 (NCTC3165_01536) - 1558771..1560153 (-) 1383 WP_172455844.1 DUF1958 domain-containing protein -
  DQM54_RS07715 (NCTC3165_01537) - 1560293..1561000 (-) 708 WP_061583073.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69498.54 Da        Isoelectric Point: 4.5382

>NTDB_id=1139123 DQM54_RS07695 WP_111723972.1 1554504..1556306(-) (pepF) [Streptococcus gordonii strain NCTC3165]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLARHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLNYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1139123 DQM54_RS07695 WP_111723972.1 1554504..1556306(-) (pepF) [Streptococcus gordonii strain NCTC3165]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGCAATTTAGCAAGGCATCTGCTGGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGATTTGATGCGCCGTATTGAGAAATTATATTCTTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTGGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTACAGTGAGTTTGGTCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGACCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACCT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACATATCCTAACCCAGCGCGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTTCCGGTGGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGAAACTATATTTCTTTAGTAGAGTCTAAAAATCGGGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGCGTTTATGAACAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAATGCGAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCGGCCTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCGCTTTTACAGCGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATTTGTACACACCTTTGTCAGAAACAGATTACAAATTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTAAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGGGCATACTCAGGAGGATCTTATGATACCAATGCCTTTATGTTGCTCAACT
GGCAGGATACACTAGATAATCTTTTTACCTTGGTGCACGAGACAGGTCACAGTATGCACTCCAGCTATACTCGTGAAACT
CAGCCTTATGTCTATGGAGACTACTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCTTGACAGAAAA
GCTCTTGGAAGAAGTAGAAGACGACGCAACTCGCTTTGCGATTCTTAATCACTTCTTGGATGGCTTTAGAGGAACGGTCT
TCCGTCAAACTCAGTTTGCGGAGTTTGAGCATGCGATTCACAAGGCTGACCAAGAAGGACAAGTATTGACTAGCGAGTTT
CTCAATGAGCTCTACGCTGACTTGAATGAGAAATACTATGGACTGAAAAAAGAAGACAATCCGCAGATTCAGTACGAATG
GGCTCGGATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCGACAGGATTTGCTGCAGCTTCGGCCTTGGCTG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGAACTATCTCAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATTAAGAAGGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCTGCCTTTGCAGTCTTTGAGCGTCGTCT
GGACGAATTTGAAGCCTTGGTAGAAAAGTTGGGATTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.289

99.333

0.678

Multiple sequence alignment