Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM54_RS02660 Genome accession   NZ_LS483375
Coordinates   548967..549698 (+) Length   243 a.a.
NCBI ID   WP_111723355.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 543967..554698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS02630 (NCTC3165_00519) - 544354..545778 (+) 1425 WP_111723351.1 NCS2 family permease -
  DQM54_RS02635 (NCTC3165_00520) tsaE 545861..546307 (+) 447 WP_111723352.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM54_RS02640 (NCTC3165_00521) - 546307..546831 (+) 525 WP_060552974.1 GNAT family N-acetyltransferase -
  DQM54_RS02645 (NCTC3165_00522) brpA 546838..548049 (+) 1212 WP_045505870.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM54_RS02650 (NCTC3165_00523) - 548099..548401 (-) 303 WP_111723353.1 hypothetical protein -
  DQM54_RS02655 (NCTC3165_00524) - 548412..548828 (-) 417 WP_111723354.1 HIT family protein -
  DQM54_RS02660 (NCTC3165_00525) pptA 548967..549698 (+) 732 WP_111723355.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS02665 (NCTC3165_00526) pptB 549695..550750 (+) 1056 WP_111723356.1 ABC transporter permease Regulator
  DQM54_RS02670 (NCTC3165_00527) ccrZ 550791..551585 (+) 795 WP_111723357.1 cell cycle regulator CcrZ -
  DQM54_RS02675 (NCTC3165_00528) trmB 551582..552217 (+) 636 WP_111723358.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM54_RS02680 (NCTC3165_00529) rimP 552329..552817 (+) 489 WP_111723359.1 ribosome maturation factor RimP -
  DQM54_RS02685 (NCTC3165_00530) nusA 552863..554104 (+) 1242 WP_111723360.1 transcription termination factor NusA -
  DQM54_RS02690 (NCTC3165_00531) rnpM 554115..554411 (+) 297 WP_008808548.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26893.34 Da        Isoelectric Point: 4.5658

>NTDB_id=1139101 DQM54_RS02660 WP_111723355.1 548967..549698(+) (pptA) [Streptococcus gordonii strain NCTC3165]
MLEIKGLTGGYVNIPVLKDVSFEVGDGQLVGLIGLNGAGKSTTINEIIGLLTPYQGEILIDGLSLKSDRTAYRKKIGFIP
ETPSLYEELTLKEHIETVAMAYDIDSQTAMDRVEKLLQIFRLKDKLDWFPVNFSKGMKQKVMIICAFVIDPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGNLAQLREEFSLPDASLNEIYLALTEE
ATL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1139101 DQM54_RS02660 WP_111723355.1 548967..549698(+) (pptA) [Streptococcus gordonii strain NCTC3165]
ATGTTAGAAATAAAAGGGCTTACAGGTGGCTATGTCAATATTCCTGTTTTGAAAGATGTCAGTTTTGAAGTTGGAGACGG
TCAGCTTGTTGGACTGATTGGTCTAAACGGGGCTGGAAAGTCAACAACCATCAATGAAATAATCGGCCTATTGACGCCTT
ATCAAGGGGAGATTTTGATAGATGGTTTGAGTTTGAAGTCAGACAGGACAGCCTATCGCAAAAAGATTGGTTTTATCCCT
GAAACACCGAGTCTCTACGAAGAATTAACCTTGAAGGAACATATCGAGACGGTTGCTATGGCCTATGACATTGACTCGCA
AACAGCTATGGATCGAGTGGAAAAATTGCTTCAGATTTTTCGTCTTAAAGACAAGTTAGATTGGTTTCCGGTTAATTTCT
CAAAGGGAATGAAGCAGAAGGTTATGATCATCTGTGCCTTTGTGATTGACCCTAGCTTGTTTATTGTGGATGAACCTTTT
TTAGGATTGGATCCTCTGGCTATTTCTGATTTGATCGAGCTCCTAGCAGAAGAAAAGGCTAAAGGAAAGTCTATATTGAT
GAGTACTCATGTGCTTGATTCGGCAGAGAAAATGTGTGATTCTTTTGTTATCTTGCACAAAGGTCAGGTACGGGCTAAAG
GAAATTTAGCTCAGTTGCGAGAAGAATTTTCATTGCCAGATGCAAGTCTCAATGAAATCTATCTAGCTTTGACAGAAGAG
GCAACCCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

98.354

0.733
  pptA Streptococcus thermophilus LMD-9

73.64

98.354

0.724

Multiple sequence alignment