Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DQM54_RS02480 Genome accession   NZ_LS483375
Coordinates   514479..515168 (+) Length   229 a.a.
NCBI ID   WP_111723335.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 509479..520168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS02460 (NCTC3165_00487) - 509826..510695 (-) 870 WP_061597296.1 Rgg/GadR/MutR family transcriptional regulator -
  DQM54_RS02465 (NCTC3165_00488) - 510793..511323 (+) 531 WP_061597297.1 YceD family protein -
  DQM54_RS02470 (NCTC3165_00489) - 511425..512906 (+) 1482 WP_012000008.1 flotillin family protein -
  DQM54_RS02475 (NCTC3165_00490) gndA 513042..514466 (+) 1425 WP_111723334.1 NADP-dependent phosphogluconate dehydrogenase -
  DQM54_RS02480 (NCTC3165_00491) covR 514479..515168 (+) 690 WP_111723335.1 response regulator transcription factor Regulator
  DQM54_RS02485 (NCTC3165_00492) - 515529..517721 (+) 2193 WP_111723336.1 PTS transporter subunit IIBC -
  DQM54_RS02490 (NCTC3165_00493) - 517739..518554 (+) 816 WP_012000012.1 endonuclease/exonuclease/phosphatase family protein -
  DQM54_RS02495 (NCTC3165_00494) - 518697..519113 (-) 417 WP_111723337.1 hypothetical protein -
  DQM54_RS02500 (NCTC3165_00495) nrdR 519293..519766 (+) 474 WP_008808512.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26275.31 Da        Isoelectric Point: 5.1861

>NTDB_id=1139100 DQM54_RS02480 WP_111723335.1 514479..515168(+) (covR) [Streptococcus gordonii strain NCTC3165]
MAKRILLVENEKNLARFIMLELQKESYQVDLAETGQEGLALAKENDYDLLLLNNQFADGTAFAFAQQLSLLKPVAVIIVM
VSREEIADSAEEIQQFAVSYMVKPFIISDLVDKISAIFRGRDFIDQKCSQLKVPTAYRNLRVDLKNHTVYRGDEIIALTR
REYDLLVTLMSSNKVMSREQLLDRVWKYESASETNIVDVYIRYLRSKIDLPGQESYIKTVRGIGYSMQG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1139100 DQM54_RS02480 WP_111723335.1 514479..515168(+) (covR) [Streptococcus gordonii strain NCTC3165]
ATGGCGAAGCGGATTTTATTAGTTGAAAATGAAAAGAATCTAGCACGATTTATCATGCTGGAATTACAAAAGGAAAGTTA
TCAAGTAGATCTAGCGGAAACAGGGCAAGAGGGACTAGCTCTAGCAAAGGAAAACGATTATGATTTACTTTTACTAAATA
ATCAGTTTGCTGATGGAACAGCCTTTGCCTTTGCTCAACAATTAAGTTTATTAAAACCAGTTGCAGTAATCATTGTAATG
GTGAGCCGAGAGGAAATTGCGGATTCGGCTGAAGAGATTCAGCAGTTTGCAGTTTCTTATATGGTAAAACCCTTTATTAT
CAGTGATTTGGTTGATAAGATATCTGCTATCTTTCGTGGACGAGATTTTATTGATCAGAAATGTAGCCAGTTAAAAGTTC
CTACTGCTTATCGTAATTTGCGGGTTGATTTGAAAAATCATACGGTTTATCGAGGGGATGAAATTATTGCTTTGACGAGA
CGAGAGTACGATTTACTAGTGACTCTAATGAGCAGTAATAAGGTGATGAGCCGTGAGCAACTGTTAGATCGAGTGTGGAA
GTATGAAAGTGCATCTGAGACTAATATAGTGGATGTATATATTCGTTACCTCCGTAGTAAAATCGATCTTCCGGGACAAG
AAAGTTATATTAAAACCGTTCGTGGAATTGGTTATTCCATGCAGGGGTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

52.212

98.69

0.515
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.737

99.563

0.445

Multiple sequence alignment