Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q426_RS06680 Genome accession   NZ_CP006770
Coordinates   1434037..1434762 (-) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429037..1439762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS06650 (Q426_07090) - 1430379..1430894 (+) 516 WP_014622383.1 hypothetical protein -
  Q426_RS06665 (Q426_07110) trmB 1431510..1432145 (-) 636 WP_012678427.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  Q426_RS06670 (Q426_07115) ccrZ 1432145..1432936 (-) 792 WP_012515084.1 cell cycle regulator CcrZ -
  Q426_RS06675 (Q426_07120) - 1432999..1434033 (-) 1035 WP_014622382.1 ABC transporter permease -
  Q426_RS06680 (Q426_07125) pptA 1434037..1434762 (-) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  Q426_RS06685 (Q426_07135) - 1435299..1435763 (+) 465 WP_014622380.1 hypothetical protein -
  Q426_RS06690 (Q426_07140) - 1436236..1436655 (+) 420 WP_012515079.1 HIT family protein -
  Q426_RS06695 (Q426_07145) - 1436652..1436954 (+) 303 WP_014622379.1 hypothetical protein -
  Q426_RS06700 (Q426_07150) brpA 1437118..1438380 (-) 1263 WP_014622378.1 biofilm formation/cell division transcriptional regulator BrpA -
  Q426_RS06705 (Q426_07155) - 1438381..1438908 (-) 528 WP_014622377.1 GNAT family N-acetyltransferase -
  Q426_RS06710 (Q426_07160) tsaE 1438901..1439344 (-) 444 WP_014622376.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=113908 Q426_RS06680 WP_012678429.1 1434037..1434762(-) (pptA) [Streptococcus equi subsp. zooepidemicus CY]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=113908 Q426_RS06680 WP_012678429.1 1434037..1434762(-) (pptA) [Streptococcus equi subsp. zooepidemicus CY]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGACAGGTGCGTGCACAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment