Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DQO01_RS28280 Genome accession   NZ_LS483372
Coordinates   6067044..6067451 (-) Length   135 a.a.
NCBI ID   WP_053258470.1    Uniprot ID   A0A1T3A6M8
Organism   Pseudomonas fluorescens strain NCTC10038     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6062044..6072451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO01_RS28265 (NCTC10038_05718) - 6064054..6066105 (-) 2052 WP_053258467.1 methyl-accepting chemotaxis protein -
  DQO01_RS28270 (NCTC10038_05719) - 6066102..6066626 (-) 525 WP_053258468.1 chemotaxis protein CheW -
  DQO01_RS28275 (NCTC10038_05720) pilH 6066623..6066997 (-) 375 WP_053258469.1 twitching motility response regulator PilH -
  DQO01_RS28280 (NCTC10038_05721) pilG 6067044..6067451 (-) 408 WP_053258470.1 twitching motility response regulator PilG Regulator
  DQO01_RS28285 (NCTC10038_05722) gshB 6067691..6068644 (+) 954 WP_016976046.1 glutathione synthase -
  DQO01_RS28290 (NCTC10038_05723) - 6068722..6069627 (+) 906 WP_053258471.1 energy transducer TonB -
  DQO01_RS28295 (NCTC10038_05724) - 6069695..6070264 (+) 570 WP_053258472.1 YqgE/AlgH family protein -
  DQO01_RS28300 (NCTC10038_05725) ruvX 6070264..6070701 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  DQO01_RS28305 (NCTC10038_05726) pyrR 6070785..6071291 (+) 507 WP_053258473.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  DQO01_RS28310 (NCTC10038_05727) - 6071316..6072320 (+) 1005 WP_053258474.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14908.42 Da        Isoelectric Point: 7.3840

>NTDB_id=1139008 DQO01_RS28280 WP_053258470.1 6067044..6067451(-) (pilG) [Pseudomonas fluorescens strain NCTC10038]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1139008 DQO01_RS28280 WP_053258470.1 6067044..6067451(-) (pilG) [Pseudomonas fluorescens strain NCTC10038]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATCCGCCGTACCGCCGAGACGCTGTT
GAAGAACGTGGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCATTGGCCCGGATTGTTGATCACCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGGTGAAGAATAATCCGGCGTTCAAG
TCGATCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTTGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGTGCGATCAAGGCCTATGTGCCAGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T3A6M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.2

92.593

0.659
  vicR Streptococcus mutans UA159

39.683

93.333

0.37

Multiple sequence alignment