Detailed information NTG1138993

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DQO01_RS04905
• Genome accession: NZ_LS483372
• Coordinates: 1066409..1067275 (-)
• Length: 288 a.a.
• NCBI ID: WP_053254339.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain NCTC10038
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1061409..1072275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQO01_RS04865 (NCTC10038_00966)	-	1061808..1063106 (-)	1299	WP_053254333.1	NAD(P)/FAD-dependent oxidoreductase	-
DQO01_RS04870 (NCTC10038_00967)	-	1063167..1063340 (-)	174	WP_016976295.1	DUF3094 family protein	-
DQO01_RS04875 (NCTC10038_00968)	-	1063430..1064059 (-)	630	WP_053254334.1	DUF1780 domain-containing protein	-
DQO01_RS04880 (NCTC10038_00969)	-	1064162..1064629 (+)	468	WP_053254335.1	hypothetical protein	-
DQO01_RS04885 (NCTC10038_00970)	-	1064626..1065315 (+)	690	WP_053254336.1	energy-coupling factor ABC transporter permease	-
DQO01_RS04890 (NCTC10038_00971)	-	1065380..1065595 (+)	216	WP_003171680.1	hypothetical protein	-
DQO01_RS04895 (NCTC10038_00972)	yacG	1065592..1065792 (-)	201	WP_053254337.1	DNA gyrase inhibitor YacG	-
DQO01_RS04900 (NCTC10038_00973)	coaE	1065789..1066412 (-)	624	WP_053254338.1	dephospho-CoA kinase	-
DQO01_RS04905 (NCTC10038_00974)	pilD	1066409..1067275 (-)	867	WP_053254339.1	prepilin peptidase	Machinery gene
DQO01_RS04910 (NCTC10038_00975)	pilC	1067272..1068480 (-)	1209	WP_053254340.1	type II secretion system F family protein	Machinery gene
DQO01_RS04915 (NCTC10038_00976)	-	1068683..1069096 (+)	414	WP_053254341.1	pilin	-
DQO01_RS04925 (NCTC10038_00978)	-	1069404..1069709 (+)	306	WP_053254342.1	DUF6388 family protein	-
DQO01_RS04930 (NCTC10038_00979)	nadC	1069756..1070604 (-)	849	WP_053254343.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31894.09 Da
• Isoelectric Point: 8.5921

>NTDB_id=1138993 DQO01_RS04905 WP_053254339.1 1066409..1067275(-) (pilD) [Pseudomonas fluorescens strain NCTC10038]
MSLLPSAQPWGFVGMAFVLGLIVGSFINVLVWRLPKRLEREWRAQAQEVLGLPADPASPTYNLMRRNACCMYCAQPTRPW
ENIPLLSYLILRGRCAHCHEPIGRRYPATELACALGSAIVAWHFGFGWQAGAVMVLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSFDVLTTLPNALWGAVIGYMSLWTVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQILPMTLLIASLLGVL
AGLILMRLRRSQASIPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1138993 DQO01_RS04905 WP_053254339.1 1066409..1067275(-) (pilD) [Pseudomonas fluorescens strain NCTC10038]
TTGAGCCTGCTGCCCAGCGCACAGCCATGGGGTTTTGTCGGGATGGCGTTCGTTCTGGGGCTGATCGTCGGCAGCTTCAT
CAACGTGCTGGTGTGGCGCCTGCCAAAGAGGCTCGAGCGCGAATGGCGTGCCCAAGCCCAGGAAGTGCTGGGCTTGCCTG
CCGACCCCGCCAGCCCCACGTACAACCTGATGCGCCGCAACGCCTGCTGCATGTATTGCGCGCAGCCGACTCGCCCCTGG
GAAAATATCCCGCTGCTCAGTTACCTGATACTCAGAGGCCGTTGCGCCCATTGCCATGAACCTATCGGTCGCCGCTACCC
CGCCACCGAACTGGCTTGCGCGCTGGGCTCGGCCATTGTTGCCTGGCATTTCGGTTTCGGCTGGCAAGCGGGCGCGGTGA
TGGTGTTGAGCTGGGGGTTGCTGGCCATGAGCCTGATCGACGTGGATCATCAATTATTGCCGGACGTTCTGGTGCTGCCG
CTGCTATGGCTCGGGCTGATCCTCAATAGCTTCGACGTGTTGACGACACTGCCCAATGCGCTTTGGGGCGCAGTCATAGG
CTATATGAGCCTGTGGACCGTGTTCTGGTTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TATTGGCCCTGCTCGGTGCTTGGGGTGGCTGGCAGATTCTGCCGATGACGCTACTGATCGCCTCGCTGCTGGGCGTGCTC
GCCGGCCTGATCCTGATGCGCTTGCGCAGGTCCCAGGCTTCGATTCCGATGCCGTTTGGTCCCTGTCTGGCAATTGCCGG
CTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.36	96.528	0.486
pilD	Vibrio campbellii strain DS40M4	47.67	96.875	0.462
pilD	Acinetobacter nosocomialis M2	47.619	94.792	0.451
pilD	Acinetobacter baumannii D1279779	47.619	94.792	0.451
pilD	Neisseria gonorrhoeae MS11	45.926	93.75	0.431