Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DQN55_RS03855 | Genome accession | NZ_LS483370 |
| Coordinates | 789721..790581 (-) | Length | 286 a.a. |
| NCBI ID | WP_048378220.1 | Uniprot ID | - |
| Organism | Pseudomonas taetrolens strain NCTC10697 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 784721..795581
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN55_RS03820 (NCTC10697_00771) | - | 785263..786564 (-) | 1302 | WP_048378227.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| DQN55_RS03825 (NCTC10697_00772) | - | 786628..786801 (-) | 174 | WP_048378226.1 | DUF3094 family protein | - |
| DQN55_RS03830 (NCTC10697_00773) | - | 786857..787384 (-) | 528 | WP_048378225.1 | MOSC domain-containing protein | - |
| DQN55_RS03835 (NCTC10697_00774) | - | 787381..788010 (-) | 630 | WP_048378224.1 | DUF1780 domain-containing protein | - |
| DQN55_RS03840 (NCTC10697_00775) | - | 788142..788828 (+) | 687 | WP_048378223.1 | energy-coupling factor ABC transporter permease | - |
| DQN55_RS03845 (NCTC10697_00776) | yacG | 788896..789099 (-) | 204 | WP_048378222.1 | DNA gyrase inhibitor YacG | - |
| DQN55_RS03850 (NCTC10697_00777) | coaE | 789096..789719 (-) | 624 | WP_048378221.1 | dephospho-CoA kinase | - |
| DQN55_RS03855 (NCTC10697_00778) | pilD | 789721..790581 (-) | 861 | WP_048378220.1 | A24 family peptidase | Machinery gene |
| DQN55_RS03860 (NCTC10697_00779) | pilC | 790584..791795 (-) | 1212 | WP_048378219.1 | type II secretion system F family protein | Machinery gene |
| DQN55_RS03865 (NCTC10697_00780) | - | 792019..792426 (+) | 408 | WP_048378218.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| DQN55_RS03870 (NCTC10697_00781) | - | 792597..794087 (+) | 1491 | WP_048378217.1 | DNA-3-methyladenine glycosylase 2 family protein | - |
| DQN55_RS03875 (NCTC10697_00782) | - | 794090..794587 (+) | 498 | WP_048378216.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| DQN55_RS03880 (NCTC10697_00783) | nadC | 794642..795490 (-) | 849 | WP_048378215.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 31365.50 Da Isoelectric Point: 7.9345
>NTDB_id=1138976 DQN55_RS03855 WP_048378220.1 789721..790581(-) (pilD) [Pseudomonas taetrolens strain NCTC10697]
MIDFLSFHPGAFIACALVLGLLVGSFINVLVWRLPKMLEHDWQAQARELLAMPAAEKGPVYNLMLPHSHCPHCQHPLRAR
ENIPLLSYALLRGKCSQCNTAISLRYPLTELACGLLSAFIAWHFGVSGQAGWMLVLTWGLLAICLIDLEHQIVPDVLVLP
LLWLGLLLNSFDMFTSLSQAVWGAALGYASLWSIFWIFKLLTGKDGMGYGDFKLLAMLGAWGGIAILPLTLLLSSLVGAL
VGLSLLGLRRAKTSTPIPFAPYLAIAGWLALLWGGQITTFYWQLAV
MIDFLSFHPGAFIACALVLGLLVGSFINVLVWRLPKMLEHDWQAQARELLAMPAAEKGPVYNLMLPHSHCPHCQHPLRAR
ENIPLLSYALLRGKCSQCNTAISLRYPLTELACGLLSAFIAWHFGVSGQAGWMLVLTWGLLAICLIDLEHQIVPDVLVLP
LLWLGLLLNSFDMFTSLSQAVWGAALGYASLWSIFWIFKLLTGKDGMGYGDFKLLAMLGAWGGIAILPLTLLLSSLVGAL
VGLSLLGLRRAKTSTPIPFAPYLAIAGWLALLWGGQITTFYWQLAV
Nucleotide
Download Length: 861 bp
>NTDB_id=1138976 DQN55_RS03855 WP_048378220.1 789721..790581(-) (pilD) [Pseudomonas taetrolens strain NCTC10697]
ATGATTGATTTTCTGAGTTTTCACCCCGGTGCCTTCATCGCTTGTGCTTTGGTACTGGGCTTGCTGGTGGGCAGTTTTAT
CAATGTGCTGGTGTGGCGTCTGCCCAAAATGCTCGAACATGACTGGCAAGCCCAGGCCCGGGAGCTGCTGGCAATGCCGG
CCGCTGAAAAAGGCCCTGTGTATAACTTGATGTTGCCCCACTCGCACTGCCCGCATTGCCAGCATCCCCTGCGCGCCCGG
GAAAATATTCCGTTACTGAGCTATGCCTTGCTGCGTGGCAAGTGCAGCCAGTGCAATACAGCGATCAGTCTGCGTTATCC
CCTGACCGAACTGGCCTGCGGGCTGCTGTCAGCCTTCATCGCCTGGCATTTCGGTGTTAGCGGGCAAGCGGGCTGGATGC
TGGTGCTGACGTGGGGATTGCTCGCCATCTGCCTGATTGACCTCGAGCACCAGATCGTACCCGACGTGCTGGTCTTGCCC
TTGCTTTGGCTGGGCTTGCTGCTGAACAGTTTCGATATGTTCACCAGCTTGTCGCAAGCCGTATGGGGAGCTGCGCTGGG
CTATGCCAGTCTGTGGTCAATCTTCTGGATATTCAAACTGCTCACCGGCAAGGACGGAATGGGCTACGGCGACTTCAAAT
TGCTGGCCATGCTCGGCGCCTGGGGAGGCATCGCCATTTTGCCTCTGACCCTCTTGCTCTCGTCGCTGGTGGGCGCCCTC
GTGGGGCTGAGCCTGCTGGGATTACGCCGCGCCAAAACATCCACTCCCATCCCCTTTGCGCCGTATCTGGCAATTGCCGG
TTGGCTTGCATTGCTCTGGGGTGGTCAAATAACCACTTTCTATTGGCAGCTTGCGGTTTGA
ATGATTGATTTTCTGAGTTTTCACCCCGGTGCCTTCATCGCTTGTGCTTTGGTACTGGGCTTGCTGGTGGGCAGTTTTAT
CAATGTGCTGGTGTGGCGTCTGCCCAAAATGCTCGAACATGACTGGCAAGCCCAGGCCCGGGAGCTGCTGGCAATGCCGG
CCGCTGAAAAAGGCCCTGTGTATAACTTGATGTTGCCCCACTCGCACTGCCCGCATTGCCAGCATCCCCTGCGCGCCCGG
GAAAATATTCCGTTACTGAGCTATGCCTTGCTGCGTGGCAAGTGCAGCCAGTGCAATACAGCGATCAGTCTGCGTTATCC
CCTGACCGAACTGGCCTGCGGGCTGCTGTCAGCCTTCATCGCCTGGCATTTCGGTGTTAGCGGGCAAGCGGGCTGGATGC
TGGTGCTGACGTGGGGATTGCTCGCCATCTGCCTGATTGACCTCGAGCACCAGATCGTACCCGACGTGCTGGTCTTGCCC
TTGCTTTGGCTGGGCTTGCTGCTGAACAGTTTCGATATGTTCACCAGCTTGTCGCAAGCCGTATGGGGAGCTGCGCTGGG
CTATGCCAGTCTGTGGTCAATCTTCTGGATATTCAAACTGCTCACCGGCAAGGACGGAATGGGCTACGGCGACTTCAAAT
TGCTGGCCATGCTCGGCGCCTGGGGAGGCATCGCCATTTTGCCTCTGACCCTCTTGCTCTCGTCGCTGGTGGGCGCCCTC
GTGGGGCTGAGCCTGCTGGGATTACGCCGCGCCAAAACATCCACTCCCATCCCCTTTGCGCCGTATCTGGCAATTGCCGG
TTGGCTTGCATTGCTCTGGGGTGGTCAAATAACCACTTTCTATTGGCAGCTTGCGGTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
48.951 |
100 |
0.49 |
| pilD | Acinetobacter baumannii D1279779 |
48.897 |
95.105 |
0.465 |
| pilD | Acinetobacter nosocomialis M2 |
48.529 |
95.105 |
0.462 |
| pilD | Vibrio campbellii strain DS40M4 |
45.263 |
99.65 |
0.451 |
| pilD | Neisseria gonorrhoeae MS11 |
45.926 |
94.406 |
0.434 |