Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | Q426_RS03465 | Genome accession | NZ_CP006770 |
| Coordinates | 738411..739640 (+) | Length | 409 a.a. |
| NCBI ID | WP_038674257.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus CY | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 706667..759661 | 738411..739640 | within | 0 |
| IScluster/Tn | 740459..745845 | 738411..739640 | flank | 819 |
Gene organization within MGE regions
Location: 706667..759661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q426_RS03325 (Q426_03570) | - | 706667..707266 (+) | 600 | WP_014622962.1 | glycoside hydrolase family 73 protein | - |
| Q426_RS03330 (Q426_03575) | - | 707826..708023 (+) | 198 | WP_012677866.1 | helix-turn-helix transcriptional regulator | - |
| Q426_RS03335 (Q426_03580) | - | 708028..708360 (+) | 333 | WP_014622961.1 | hypothetical protein | - |
| Q426_RS03340 (Q426_03585) | - | 708564..708794 (+) | 231 | WP_014622960.1 | hypothetical protein | - |
| Q426_RS03345 | - | 708876..709088 (+) | 213 | Protein_659 | conjugal transfer protein TraA | - |
| Q426_RS03350 (Q426_03595) | - | 709201..710559 (+) | 1359 | WP_014622958.1 | SLC13 family permease | - |
| Q426_RS03355 (Q426_03600) | - | 710728..711987 (-) | 1260 | WP_014622957.1 | ISL3-like element ISSeq1 family transposase | - |
| Q426_RS03360 (Q426_03605) | - | 712429..713139 (+) | 711 | WP_012677869.1 | glycoside hydrolase family 73 protein | - |
| Q426_RS03365 (Q426_03610) | - | 713356..713736 (+) | 381 | WP_037580974.1 | DUF1149 family protein | - |
| Q426_RS03370 (Q426_03615) | - | 713736..714584 (+) | 849 | WP_014622955.1 | DegV family protein | - |
| Q426_RS03375 (Q426_03620) | - | 714684..715895 (+) | 1212 | WP_038674800.1 | CCA tRNA nucleotidyltransferase | - |
| Q426_RS03380 (Q426_03625) | - | 715888..717756 (+) | 1869 | WP_014622953.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| Q426_RS03385 (Q426_03630) | - | 717861..719606 (+) | 1746 | WP_038674246.1 | ABC transporter ATP-binding protein | - |
| Q426_RS03390 (Q426_03635) | - | 719606..721378 (+) | 1773 | WP_014622951.1 | ABC transporter ATP-binding protein | - |
| Q426_RS03395 (Q426_03640) | gdhA | 721519..722868 (+) | 1350 | WP_012515710.1 | NADP-specific glutamate dehydrogenase | - |
| Q426_RS03400 (Q426_03645) | - | 722981..723409 (+) | 429 | WP_038674249.1 | peptide deformylase | - |
| Q426_RS03405 (Q426_03650) | - | 723600..725606 (-) | 2007 | WP_014622949.1 | surface-anchored 5'-nucleotidase | - |
| Q426_RS03410 (Q426_03655) | - | 726055..727776 (+) | 1722 | WP_038674251.1 | ABC transporter ATP-binding protein | - |
| Q426_RS03415 (Q426_03660) | - | 727778..729529 (+) | 1752 | WP_014622947.1 | ABC transporter ATP-binding protein | - |
| Q426_RS03420 (Q426_03665) | mvk | 730060..730938 (+) | 879 | WP_014622946.1 | mevalonate kinase | - |
| Q426_RS03425 (Q426_03670) | mvaD | 730920..731864 (+) | 945 | WP_014622945.1 | diphosphomevalonate decarboxylase | - |
| Q426_RS03430 (Q426_03675) | - | 731857..732855 (+) | 999 | WP_014622944.1 | phosphomevalonate kinase | - |
| Q426_RS03435 (Q426_03680) | fni | 732858..733850 (+) | 993 | WP_038674253.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| Q426_RS03440 (Q426_03685) | - | 734135..735418 (-) | 1284 | WP_038674810.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| Q426_RS03445 (Q426_03690) | - | 735405..736583 (-) | 1179 | WP_014622941.1 | hydroxymethylglutaryl-CoA synthase | - |
| Q426_RS03450 (Q426_03695) | - | 736768..737607 (+) | 840 | WP_014622940.1 | thymidylate synthase | - |
| Q426_RS03455 (Q426_03700) | - | 737688..738185 (+) | 498 | WP_038674254.1 | dihydrofolate reductase | - |
| Q426_RS10215 (Q426_03705) | - | 738205..738375 (+) | 171 | WP_012515696.1 | hypothetical protein | - |
| Q426_RS03465 (Q426_03710) | clpX | 738411..739640 (+) | 1230 | WP_038674257.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| Q426_RS03470 (Q426_03715) | yihA | 739650..740249 (+) | 600 | WP_012677890.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| Q426_RS03475 (Q426_03720) | tnpA | 740459..740932 (+) | 474 | WP_014622935.1 | IS200/IS605 family transposase | - |
| Q426_RS03480 (Q426_03725) | - | 741362..744370 (+) | 3009 | WP_014622933.1 | leucine-rich repeat domain-containing protein | - |
| Q426_RS03485 (Q426_03735) | - | 744586..745845 (-) | 1260 | WP_014622678.1 | ISL3-like element ISSeq1 family transposase | - |
| Q426_RS03490 (Q426_03740) | - | 745981..748074 (-) | 2094 | WP_014622932.1 | AAA family ATPase | - |
| Q426_RS03495 (Q426_03750) | ndk | 748445..748864 (+) | 420 | WP_012515690.1 | nucleoside-diphosphate kinase | - |
| Q426_RS03500 (Q426_03755) | - | 749365..750171 (+) | 807 | WP_014622931.1 | DNA/RNA non-specific endonuclease | - |
| Q426_RS03505 (Q426_03760) | - | 750460..751425 (-) | 966 | WP_014622929.1 | polysaccharide deacetylase family protein | - |
| Q426_RS03510 (Q426_03765) | - | 751597..752880 (+) | 1284 | WP_014622928.1 | homoserine dehydrogenase | - |
| Q426_RS03515 (Q426_03770) | thrB | 752882..753742 (+) | 861 | WP_038674261.1 | homoserine kinase | - |
| Q426_RS03520 (Q426_03775) | - | 753921..755180 (+) | 1260 | WP_014622926.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| Q426_RS03525 (Q426_03780) | folE | 755237..755803 (+) | 567 | WP_038674263.1 | GTP cyclohydrolase I FolE | - |
| Q426_RS03530 (Q426_03785) | folP | 755811..756611 (+) | 801 | WP_014622924.1 | dihydropteroate synthase | - |
| Q426_RS03535 (Q426_03790) | folB | 756618..756977 (+) | 360 | WP_012679532.1 | dihydroneopterin aldolase | - |
| Q426_RS03540 (Q426_03795) | folK | 756974..757480 (+) | 507 | WP_014622923.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| Q426_RS03545 (Q426_03800) | murB | 757575..758462 (+) | 888 | WP_038674812.1 | UDP-N-acetylmuramate dehydrogenase | - |
| Q426_RS03550 (Q426_03805) | - | 758507..759661 (+) | 1155 | WP_014622922.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45114.60 Da Isoelectric Point: 4.6016
>NTDB_id=113895 Q426_RS03465 WP_038674257.1 738411..739640(+) (clpX) [Streptococcus equi subsp. zooepidemicus CY]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEINAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFAKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEINAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFAKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA
Nucleotide
Download Length: 1230 bp
>NTDB_id=113895 Q426_RS03465 WP_038674257.1 738411..739640(+) (clpX) [Streptococcus equi subsp. zooepidemicus CY]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAAGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTAGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCAGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCCATTACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCAATGCTGAGGATATTCAAAAATTTG
GTCTGATTCCTGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGCAAA
GGGAGCTCTGGAAGCTATTGCAGGCAGAGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAAGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTAGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCAGCTGATTACAATGTTGAGCGTGCAGAGCGCGGCATTATTTATGTTGACGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCCATTACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCAATGCTGAGGATATTCAAAAATTTG
GTCTGATTCCTGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGCAAA
GGGAGCTCTGGAAGCTATTGCAGGCAGAGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATCGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
88.509 |
100 |
0.885 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
58.853 |
98.044 |
0.577 |