Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM56_RS08675 Genome accession   NZ_LS483368
Coordinates   1790563..1791489 (-) Length   308 a.a.
NCBI ID   WP_042671297.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785563..1796489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS08660 (NCTC6176_01756) - 1787007..1788170 (+) 1164 WP_111710810.1 IS30-like element ISSeq6 family transposase -
  DQM56_RS08665 (NCTC6176_01757) amiF 1788568..1789491 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQM56_RS08670 (NCTC6176_01758) amiE 1789484..1790554 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQM56_RS08675 (NCTC6176_01759) amiD 1790563..1791489 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  DQM56_RS08680 (NCTC6176_01760) amiC 1791489..1792988 (-) 1500 WP_012677389.1 ABC transporter permease Regulator
  DQM56_RS08685 (NCTC6176_01761) amiA3 1793052..1795028 (-) 1977 WP_111710811.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34546.44 Da        Isoelectric Point: 7.1547

>NTDB_id=1138919 DQM56_RS08675 WP_042671297.1 1790563..1791489(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1138919 DQM56_RS08675 WP_042671297.1 1790563..1791489(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTATTTAGACAATTTTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTGATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATATTGATTTCGGTTATTGCAACAATCATCAACATGATTATCGGAGTTGTTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAATTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCAGTGATCGTTTCAATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGGTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment