Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQM56_RS08665 Genome accession   NZ_LS483368
Coordinates   1788568..1789491 (-) Length   307 a.a.
NCBI ID   WP_012516278.1    Uniprot ID   A0AAW3GKE0
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1787007..1788170 1788568..1789491 flank 398


Gene organization within MGE regions


Location: 1787007..1789491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS08660 (NCTC6176_01756) - 1787007..1788170 (+) 1164 WP_111710810.1 IS30-like element ISSeq6 family transposase -
  DQM56_RS08665 (NCTC6176_01757) amiF 1788568..1789491 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34670.89 Da        Isoelectric Point: 6.9308

>NTDB_id=1138917 DQM56_RS08665 WP_012516278.1 1788568..1789491(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1138917 DQM56_RS08665 WP_012516278.1 1788568..1789491(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGTGGAAAGACAACAATCGGTCGTG
CCATCATTGGTTTAAATGAAACAAGCTCAGGCGAAATCCGCTATGACGGTAAAATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGC
ATTGCAAGAGCACTTGTAATGGATCCAGAGTTTGTCATTGCTGATGAGCCAATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCGGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTTGCTGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGTTGTCAGCAGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTCTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCAGAAGCGGAGCGTTACCGTAAAGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

83.007

99.674

0.827
  amiF Streptococcus thermophilus LMD-9

82.68

99.674

0.824
  amiF Streptococcus salivarius strain HSISS4

82.68

99.674

0.824

Multiple sequence alignment