Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   DQM56_RS07830 Genome accession   NZ_LS483368
Coordinates   1635249..1636571 (-) Length   440 a.a.
NCBI ID   WP_111710749.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630249..1641571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS07820 (NCTC6176_01587) hpf 1633985..1634533 (-) 549 WP_111710748.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQM56_RS07825 (NCTC6176_01588) - 1634609..1635274 (-) 666 WP_172453709.1 ComF family protein -
  DQM56_RS07830 (NCTC6176_01589) comFA/cflA 1635249..1636571 (-) 1323 WP_111710749.1 DEAD/DEAH box helicase Machinery gene
  DQM56_RS07835 (NCTC6176_01590) - 1636627..1637268 (+) 642 WP_014623353.1 YigZ family protein -
  DQM56_RS07840 (NCTC6176_01591) cysK 1637389..1638315 (+) 927 WP_111710750.1 cysteine synthase A -
  DQM56_RS07845 (NCTC6176_01592) - 1638716..1639078 (-) 363 WP_012516140.1 S1 RNA-binding domain-containing protein -
  DQM56_RS07850 (NCTC6176_01593) - 1639078..1640478 (-) 1401 WP_111710751.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQM56_RS07855 (NCTC6176_01594) - 1640511..1641152 (-) 642 WP_111710752.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49915.02 Da        Isoelectric Point: 9.6000

>NTDB_id=1138911 DQM56_RS07830 WP_111710749.1 1635249..1636571(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MENIENYYGRLLPEGQCPKAVSVWACSLQSMVAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
ASFPKGHYLRWQGQLTTYQAAISHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVDKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEAYHRSPIIIATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
RDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLETIHRGKLPRRLITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAYASSQSSNRMAIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISKAMLKAVREIKDMNQKGYQNELSTLSQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1138911 DQM56_RS07830 WP_111710749.1 1635249..1636571(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAGGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGCAG
CTTACAAAGCATGGTCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGCTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTTCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTATCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACCTTAGTTCATGCGGTTACTGGTGCTGGTAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTGATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAGGTCTGTCTTATGCATGCTGAGTCAGAGGCTTATCATAGAAGTCCCATAATCATTGC
CACAACACATCAATTGATGACCTTTTATCATGCTTTTGATCTGCTTATTATTGACGAAGTAGATGCCTTTCCCTTTGTCA
ACAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AGAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTAGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGACTATCCATCGCGGGAAATTGCCTAGAAGACTAATCACCCTAG
TCAAAAAACAAAGGGCAACAGGCTATCCCCTCTTAATCTTTTTCCCCCTTATTGAGCTGGCTGAGCAGTGCTGTCAGCTG
CTCCAAAAGTATTTTCCTAAGGAAACTATTGCTTATGCTTCCAGTCAGTCATCAAATCGAATGGCTATCATTGAGCAATT
TAGACAAGGACAAATCACTATACTCATATCAACAACCATTTTAGAAAGAGGTGTGACCTTTCCGACCGTAGATGTCTTTG
TCTTGTTAGCCAATCATCGTCTTTACACAAGCAGCAGTCTGATTCAGATTTCAGGTCGCGTCGGGCGTTCCTTGGAAAGG
CCTGAAGGACAGGTGCTGTTTTTTCATGACGGCATTAGCAAGGCCATGCTCAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGTCACAATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(101-244)

Helicase conserved C-terminal domain (Helicase_C)

(287-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae Rx1

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae D39

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae TIGR4

52.471

96.591

0.507
  comFA/cflA Streptococcus mitis SK321

52.471

96.591

0.507
  comFA/cflA Streptococcus mitis NCTC 12261

52.235

96.591

0.505
  comFA Lactococcus lactis subsp. cremoris KW2

47.959

89.091

0.427

Multiple sequence alignment