Detailed information NTG1138901

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: DQM56_RS05575
• Genome accession: NZ_LS483368
• Coordinates: 1158213..1159442 (-)
• Length: 409 a.a.
• NCBI ID: WP_111710590.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC6176
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1153213..1164442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM56_RS05560 (NCTC6176_01123)	hupY	1154230..1157232 (-)	3003	WP_111710589.1	leucine-rich repeat adhesin HupY/LrrG	-
DQM56_RS05570 (NCTC6176_01125)	yihA	1157604..1158203 (-)	600	WP_012677890.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
DQM56_RS05575 (NCTC6176_01126)	clpX	1158213..1159442 (-)	1230	WP_111710590.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
DQM56_RS05580 (NCTC6176_01127)	-	1159478..1159648 (-)	171	WP_012515696.1	hypothetical protein	-
DQM56_RS05585 (NCTC6176_01128)	-	1159668..1160165 (-)	498	WP_038674254.1	dihydrofolate reductase	-
DQM56_RS05590 (NCTC6176_01129)	-	1160246..1161085 (-)	840	WP_014622940.1	thymidylate synthase	-
DQM56_RS05595 (NCTC6176_01130)	-	1161270..1162445 (+)	1176	WP_111710591.1	hydroxymethylglutaryl-CoA synthase	-
DQM56_RS05600 (NCTC6176_01131)	-	1162432..1163715 (+)	1284	WP_172453727.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45171.69 Da
• Isoelectric Point: 4.5726

>NTDB_id=1138901 DQM56_RS05575 WP_111710590.1 1158213..1159442(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=1138901 DQM56_RS05575 WP_111710590.1 1158213..1159442(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGTAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAAGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTAGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTCCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAGCGTGCAGAGCGTGGCATTATTTATGTTGATGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGTAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.102	98.044	0.579