Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM60_RS08305 Genome accession   NZ_LS483366
Coordinates   1790018..1790749 (-) Length   243 a.a.
NCBI ID   WP_014632700.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785018..1795749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS08280 (NCTC7366_01671) - 1786086..1787261 (+) 1176 WP_084870998.1 NAD(P)/FAD-dependent oxidoreductase -
  DQM60_RS08290 (NCTC7366_01673) trmB 1787484..1788125 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM60_RS08295 (NCTC7366_01674) ccrZ 1788135..1788926 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  DQM60_RS08300 (NCTC7366_01675) pptB 1788984..1790018 (-) 1035 WP_415244984.1 ABC transporter permease Regulator
  DQM60_RS08305 (NCTC7366_01676) pptA 1790018..1790749 (-) 732 WP_014632700.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS08310 (NCTC7366_01677) - 1790814..1791233 (+) 420 WP_014632699.1 HIT family protein -
  DQM60_RS08315 (NCTC7366_01678) - 1791230..1791529 (+) 300 WP_084871000.1 hypothetical protein -
  DQM60_RS08320 (NCTC7366_01679) - 1791581..1792309 (-) 729 WP_084871001.1 hypothetical protein -
  DQM60_RS08325 (NCTC7366_01680) - 1792327..1792962 (-) 636 WP_084871002.1 DUF4230 domain-containing protein -
  DQM60_RS08330 (NCTC7366_01682) - 1793534..1795639 (-) 2106 WP_004183275.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26869.13 Da        Isoelectric Point: 4.4799

>NTDB_id=1138793 DQM60_RS08305 WP_014632700.1 1790018..1790749(-) (pptA) [Streptococcus salivarius strain NCTC7366]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGNLEELRQTFGDDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1138793 DQM60_RS08305 WP_014632700.1 1790018..1790749(-) (pptA) [Streptococcus salivarius strain NCTC7366]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACCTTTGAGGTGGCTGATGG
TGAATTAGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCCAGCTATCGTCAGAAGATAGGTTATATTCCC
GAAACACCAAGTCTCTATGAAGAATTGACGCTTCGTGAACATTTGGAAACTGTGCTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATAGTTGATGAACCCTTC
TTGGGCTTGGACCCCTTGGCAATCTCCGACTTAATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCAATTCTCAT
GTCTACACACGTTTTGGATTCAGCTGAGAAGATGTGCGACCGCTTCGTGATTTTGCATCATGGACAGGTCTTGGCACAGG
GAAATCTTGAGGAGCTCCGTCAGACTTTTGGCGATGATAGTGCTAGTCTTAACGATATCTACATGCAGCTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

99.177

100

0.992
  pptA Streptococcus thermophilus LMD-9

97.119

100

0.971

Multiple sequence alignment