Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQM55_RS09485 Genome accession   NZ_LS483364
Coordinates   1899518..1900012 (-) Length   164 a.a.
NCBI ID   WP_111676436.1    Uniprot ID   A0A2X3Y125
Organism   Streptococcus sanguinis strain NCTC11086     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1894518..1905012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS09455 (NCTC11086_01921) - 1895240..1895914 (+) 675 WP_101771750.1 DUF1129 domain-containing protein -
  DQM55_RS09460 (NCTC11086_01922) - 1895932..1896141 (-) 210 WP_002898286.1 DUF1648 domain-containing protein -
  DQM55_RS09465 (NCTC11086_01923) - 1896141..1897751 (-) 1611 WP_111676430.1 ABC transporter permease -
  DQM55_RS09470 (NCTC11086_01924) - 1897678..1898391 (-) 714 WP_111676432.1 ABC transporter ATP-binding protein -
  DQM55_RS09475 (NCTC11086_01925) - 1898532..1899188 (-) 657 WP_172454763.1 TetR/AcrR family transcriptional regulator -
  DQM55_RS09480 (NCTC11086_01926) rpsR 1899242..1899481 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQM55_RS09485 (NCTC11086_01927) ssbA 1899518..1900012 (-) 495 WP_111676436.1 single-stranded DNA-binding protein Machinery gene
  DQM55_RS09490 (NCTC11086_01928) rpsF 1900024..1900314 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  DQM55_RS09495 (NCTC11086_01929) hutI 1900493..1901758 (-) 1266 WP_002896498.1 imidazolonepropionase -
  DQM55_RS09500 (NCTC11086_01930) - 1901958..1903988 (+) 2031 WP_111676438.1 urocanate hydratase -
  DQM55_RS09505 (NCTC11086_01931) ftcD 1904103..1905002 (+) 900 WP_002903832.1 glutamate formimidoyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18117.75 Da        Isoelectric Point: 4.7079

>NTDB_id=1138687 DQM55_RS09485 WP_111676436.1 1899518..1900012(-) (ssbA) [Streptococcus sanguinis strain NCTC11086]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRSNRDGQSSGGYGGNSFGGSSAPSYGSADSSNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1138687 DQM55_RS09485 WP_111676436.1 1899518..1900012(-) (ssbA) [Streptococcus sanguinis strain NCTC11086]
ATGATTAATAACGTTGTACTGGTGGGTCGTATGACCCGTGATGCCGAGCTTCGCTATACTCCGCAGAACCAAGCGGTCGC
AACATTTACTCTGGCTGTCAATCGTAACTTTAAAAATCAAAATGGCGAGCGAGAAGCGGACTTTATTAATGTTGTCATCT
GGCGCCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGAGCCCTAATCGGAATTACAGGCCGTATTCAAACGCGT
AACTACGAGAATCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTTGTTGCGGACAATTTCCAACTCTTGGAAAGCCGCTC
TAATCGTGATGGTCAGTCATCTGGCGGTTACGGTGGGAACAGCTTCGGCGGCAGCTCTGCTCCAAGTTATGGCAGTGCGG
ACTCGTCTAACCAAGTACCGAACTTTTCTCGTGATGAGAGCCCATTTGGCAATTCTAACCCAATGGATATCTCAGACGAC
GATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3Y125

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.585

Multiple sequence alignment