Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpX   Type   Regulator
Locus tag   DQM55_RS06365 Genome accession   NZ_LS483364
Coordinates   1234733..1235962 (-) Length   409 a.a.
NCBI ID   WP_111675862.1    Uniprot ID   A0A2X3YL95
Organism   Streptococcus sanguinis strain NCTC11086     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1229733..1240962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS06340 (NCTC11086_01314) - 1229878..1230675 (-) 798 WP_111675857.1 formate/nitrite transporter family protein -
  DQM55_RS06345 (NCTC11086_01315) mmuM 1230789..1231736 (-) 948 WP_111675858.1 homocysteine S-methyltransferase -
  DQM55_RS06350 (NCTC11086_01316) - 1231746..1233152 (-) 1407 WP_111675859.1 amino acid permease -
  DQM55_RS06355 (NCTC11086_01317) - 1233288..1233986 (-) 699 WP_111675860.1 glucosaminidase domain-containing protein -
  DQM55_RS06360 (NCTC11086_01318) yihA 1234135..1234722 (-) 588 WP_111675861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DQM55_RS06365 (NCTC11086_01319) clpX 1234733..1235962 (-) 1230 WP_111675862.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DQM55_RS06375 (NCTC11086_01321) - 1236187..1236699 (-) 513 WP_111675863.1 dihydrofolate reductase -
  DQM55_RS06380 (NCTC11086_01322) - 1236822..1237661 (-) 840 WP_111675864.1 thymidylate synthase -
  DQM55_RS06385 (NCTC11086_01323) - 1237766..1238725 (-) 960 WP_111675865.1 ROK family glucokinase -
  DQM55_RS06395 (NCTC11086_01324) - 1238838..1239248 (-) 411 WP_111675866.1 GNAT family N-acetyltransferase -
  DQM55_RS06400 (NCTC11086_01325) - 1239320..1239907 (-) 588 WP_111675867.1 hypothetical protein -

Sequence


Protein


Download         Length: 409 a.a.        Molecular weight: 45573.00 Da        Isoelectric Point: 4.3984

>NTDB_id=1138670 DQM55_RS06365 WP_111675862.1 1234733..1235962(-) (clpX) [Streptococcus sanguinis strain NCTC11086]
MPTSRNDDMMVFCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINYHDSREEEDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDGSYMQEIVSEDVQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1138670 DQM55_RS06365 WP_111675862.1 1234733..1235962(-) (clpX) [Streptococcus sanguinis strain NCTC11086]
ATGCCTACAAGTCGTAATGATGATATGATGGTTTTTTGTTCTTTCTGTGGGAAGAACCAAGATGAGGTACAGAAGATTAT
CGCTGGTAACAATGCCTTTATCTGTAATGAATGTGTGGAACTGGCGCAGGAAATCATCCGTGAAGAGCTAGCCGAGGAAG
TGCTGGCAGATCTGTCTGAGGTACCAAAACCTCAGGAGCTGCTTAATATCTTGAACCACTATGTTATCGGGCAAGACCGA
GCTAAGCGTGCCTTAGCAGTAGCGGTCTATAATCACTACAAACGTATTAACTACCACGACAGCCGAGAAGAAGAAGATGT
GGAACTGCAAAAGTCAAATATTTTGATGATTGGCCCGACCGGGTCAGGTAAGACCTTCCTGGCGCAGACTCTTGCTCGCA
GTCTCAATGTGCCTTTTGCCATTGCTGACGCAACAGCTCTGACTGAAGCTGGTTATGTCGGGGAAGATGTGGAAAATATT
CTCCTCAAGCTTTTGCAGGCAGCTGACTTTAATATTGAACGTGCAGAACGCGGCATTATCTATGTTGATGAGATTGACAA
GATTGCCAAGAAAGGTGAGAACGTCTCAATTACTCGTGATGTTTCAGGCGAAGGAGTTCAGCAAGCTCTGCTGAAGATTA
TCGAAGGAACAGTAGCTAGTGTACCGCCGCAGGGTGGACGCAAGCATCCGCAGCAGGAAATGATTCAGGTTGATACCAAG
AATATTCTCTTCATTGTTGGCGGTGCCTTTGACGGTATAGAAGAAATCGTAAAACAGCGTCTGGGTGAGAAAATCATTGG
TTTCGGTCAGAATAATCGAGCGATTGACGAAGATGGATCCTATATGCAGGAAATCGTCTCAGAAGATGTCCAAAAGTTTG
GTATTATCCCTGAGTTAATCGGCCGTTTGCCTGTTTTTGCTGCTCTGGAGCAACTAACAGTTGATGATTTGGTTCGGATT
TTGAAAGAGCCTAGAAACGCCCTTATTAAGCAGTATCAGGCACTTCTATCTTATGATGATGTTAAGCTTGAATTTGATGA
GGATGCTCTGCAGGAGATTGCCAATAAAGCGATTGAACGTAAAACAGGTGCTCGCGGTCTTCGTTCTATCATCGAAGAAA
CTATGATGGATGTCATGTTTGAAGTTCCAAGTCAGGAAAATGTCAAGCTTGTCCGCATTACCAAAGAAGCAGTTGATGGA
ACAGATAAGCCTATTCTAGAAACTGCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2X3YL95

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

85.33

100

0.853

  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.044

0.565


Multiple sequence alignment