Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM58_RS11135 Genome accession   NZ_LS483363
Coordinates   56572..56670 (+) Length   32 a.a.
NCBI ID   WP_198763767.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9414     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 51572..61670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM58_RS00335 (NCTC9414_00068) - 52633..53889 (+) 1257 WP_012766419.1 DUF4041 domain-containing protein -
  DQM58_RS00340 (NCTC9414_00069) - 53882..54091 (+) 210 WP_014611912.1 hypothetical protein -
  DQM58_RS00345 (NCTC9414_00070) purB 54140..55432 (+) 1293 WP_003056595.1 adenylosuccinate lyase -
  DQM58_RS00350 (NCTC9414_00071) comR 55574..56485 (+) 912 WP_003060893.1 XRE family transcriptional regulator Regulator
  DQM58_RS11135 (NCTC9414_00072) comS 56572..56670 (+) 99 WP_198763767.1 quorum-sensing system DWW-type pheromone Regulator
  DQM58_RS00355 (NCTC9414_00073) ruvB 56704..57702 (+) 999 WP_015057190.1 Holliday junction branch migration DNA helicase RuvB -
  DQM58_RS00360 (NCTC9414_00074) - 57837..58268 (+) 432 WP_003059365.1 low molecular weight protein-tyrosine-phosphatase -
  DQM58_RS00365 (NCTC9414_00075) - 58297..58698 (+) 402 WP_003049089.1 MORN repeat-containing protein -
  DQM58_RS00370 (NCTC9414_00076) - 58695..60470 (+) 1776 WP_003059359.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3718.54 Da        Isoelectric Point: 9.1703

>NTDB_id=1138641 DQM58_RS11135 WP_198763767.1 56572..56670(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9414]
MFKKIKPYLLLAAVVAFKVACAMNEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1138641 DQM58_RS11135 WP_198763767.1 56572..56670(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9414]
ATGTTTAAAAAAATCAAACCATATTTGTTATTAGCCGCAGTCGTTGCTTTCAAAGTTGCTTGTGCAATGAACGAATTTGA
TTGGTGGAACCTAGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

81.25

100

0.813
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment