Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM53_RS11285 Genome accession   NZ_LS483361
Coordinates   55908..56006 (+) Length   32 a.a.
NCBI ID   WP_014611913.1    Uniprot ID   A0A380JYX6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50908..61006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS00330 (NCTC6179_00066) purE 51896..52384 (+) 489 WP_102776662.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  DQM53_RS00335 (NCTC6179_00067) purK 52371..53465 (+) 1095 WP_111714684.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQM53_RS00340 (NCTC6179_00068) purB 53475..54767 (+) 1293 WP_111714687.1 adenylosuccinate lyase -
  DQM53_RS00345 (NCTC6179_00069) comR 54910..55821 (+) 912 WP_111714689.1 XRE family transcriptional regulator Regulator
  DQM53_RS11285 (NCTC6179_00070) comS 55908..56006 (+) 99 WP_014611913.1 quorum-sensing system DWW-type pheromone Regulator
  DQM53_RS00350 (NCTC6179_00071) ruvB 56040..57038 (+) 999 WP_111714692.1 Holliday junction branch migration DNA helicase RuvB -
  DQM53_RS00355 (NCTC6179_00072) - 57173..57604 (+) 432 WP_111714695.1 low molecular weight protein-tyrosine-phosphatase -
  DQM53_RS00360 (NCTC6179_00073) - 57633..58034 (+) 402 WP_111714697.1 MORN repeat-containing protein -
  DQM53_RS00365 (NCTC6179_00074) - 58031..59806 (+) 1776 WP_111714700.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3771.59 Da        Isoelectric Point: 10.4764

>NTDB_id=1138554 DQM53_RS11285 WP_014611913.1 55908..56006(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MFKKIKPYLLLAAVVAFKVARAMNEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1138554 DQM53_RS11285 WP_014611913.1 55908..56006(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGTTTAAAAAAATCAAACCATATTTGTTATTAGCCGCAGTCGTTGCTTTCAAAGTTGCTCGTGCAATGAACGAATTTGA
TTGGTGGAACCTAGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JYX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

84.375

100

0.844
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment