Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | DQM53_RS04915 | Genome accession | NZ_LS483361 |
| Coordinates | 951267..953366 (-) | Length | 699 a.a. |
| NCBI ID | WP_111716209.1 | Uniprot ID | A0A9X8XFJ9 |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 946267..958366
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM53_RS04885 (NCTC6179_01002) | - | 946767..947606 (+) | 840 | WP_111716201.1 | thymidylate synthase | - |
| DQM53_RS04890 (NCTC6179_01003) | - | 947687..948184 (+) | 498 | WP_111716204.1 | dihydrofolate reductase | - |
| DQM53_RS04895 (NCTC6179_01004) | - | 948204..948374 (+) | 171 | WP_003054200.1 | hypothetical protein | - |
| DQM53_RS04900 (NCTC6179_01005) | clpX | 948490..949719 (+) | 1230 | WP_003054192.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| DQM53_RS04905 (NCTC6179_01006) | yihA | 949729..950328 (+) | 600 | WP_003061604.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| DQM53_RS04910 (NCTC6179_01007) | - | 950467..951210 (+) | 744 | WP_111716206.1 | hypothetical protein | - |
| DQM53_RS04915 (NCTC6179_01008) | clpC | 951267..953366 (-) | 2100 | WP_111716209.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| DQM53_RS04920 (NCTC6179_01011) | rplJ | 954132..954632 (+) | 501 | WP_003050354.1 | 50S ribosomal protein L10 | - |
| DQM53_RS04925 (NCTC6179_01012) | rplL | 954697..955062 (+) | 366 | WP_003043797.1 | 50S ribosomal protein L7/L12 | - |
| DQM53_RS04930 (NCTC6179_01013) | pbp3 | 955300..956529 (+) | 1230 | WP_111716212.1 | D-alanyl-D-alanine carboxypeptidase PBP3 | - |
| DQM53_RS04935 (NCTC6179_01014) | - | 956626..957588 (-) | 963 | WP_111716215.1 | polysaccharide deacetylase family protein | - |
Sequence
Protein
Download Length: 699 a.a. Molecular weight: 77304.06 Da Isoelectric Point: 4.9716
>NTDB_id=1138527 DQM53_RS04915 WP_111716209.1 951267..953366(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MTNYYDKDPFGNMDDIFNQLMGNMGGYRSENRRYLVNGREMTPEEFQAYRQTGRLSDKGTEQPTAQGHQTKKDGILAKLG
TNLTEEARQGKLDPVIGRNHEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGL
EAGTQYRGSFEENIQNMIQEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADMLKPALSRGELTLIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILIGIRNLYEQHHNVILPDAVLKAAIDYSIQYIPQRSLPDKAIDLVDMTAAHLAA
QHPVTDLKSLEAEMTTQKNIQEEAVAKEDFERALTAKTRIEELQKQMDNHSEDQKVTATVNDIAESVERLTGVPVSNMGA
SDLERLKKISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKEAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNT
VIIATSNAGFGHQEDENTDQSAIMDRIAPYFRPEFLNRFNGVIEFNHLQKEDLEEIVDLMLAEVNQTIAKKGISLAISED
AKAHLIELGYDHAMGVRPLRRVIEQEIRDRITDFYLDHPEVKNLQASLEQGQLVIHDKN
MTNYYDKDPFGNMDDIFNQLMGNMGGYRSENRRYLVNGREMTPEEFQAYRQTGRLSDKGTEQPTAQGHQTKKDGILAKLG
TNLTEEARQGKLDPVIGRNHEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGL
EAGTQYRGSFEENIQNMIQEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADMLKPALSRGELTLIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILIGIRNLYEQHHNVILPDAVLKAAIDYSIQYIPQRSLPDKAIDLVDMTAAHLAA
QHPVTDLKSLEAEMTTQKNIQEEAVAKEDFERALTAKTRIEELQKQMDNHSEDQKVTATVNDIAESVERLTGVPVSNMGA
SDLERLKKISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKEAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNT
VIIATSNAGFGHQEDENTDQSAIMDRIAPYFRPEFLNRFNGVIEFNHLQKEDLEEIVDLMLAEVNQTIAKKGISLAISED
AKAHLIELGYDHAMGVRPLRRVIEQEIRDRITDFYLDHPEVKNLQASLEQGQLVIHDKN
Nucleotide
Download Length: 2100 bp
>NTDB_id=1138527 DQM53_RS04915 WP_111716209.1 951267..953366(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGACAAATTATTATGACAAAGATCCTTTTGGAAACATGGATGATATCTTTAATCAACTAATGGGCAATATGGGTGGCTA
TCGCAGTGAAAATCGACGCTATTTAGTGAACGGACGCGAAATGACGCCTGAAGAATTCCAGGCATATCGTCAAACTGGAC
GTCTAAGCGATAAAGGTACTGAACAACCTACAGCCCAAGGTCATCAGACCAAAAAGGATGGGATTTTAGCTAAACTTGGC
ACCAACTTAACGGAAGAAGCAAGACAAGGAAAACTTGATCCTGTTATTGGTCGCAATCACGAAATTCAAGCCACTGCGGA
AATTTTAGCTCGCCGAACAAAGAATAATCCTGTTCTAGTCGGAGATGCCGGTGTTGGTAAAACAGCTGTGGTTGAAGGGC
TAGCTCAAGCTATTGTGAATGGTGACGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCCATTGATATTTCTGGCCTT
GAAGCAGGCACTCAGTACCGTGGCTCCTTTGAAGAAAATATCCAAAACATGATTCAAGAGGTTAAAGAAGCTGGGAATAT
TATTCTTTTCTTTGATGAAATTCATCAAATTCTTGGTGCAGGTTCCACTGGTGGTGACTCTGGGTCTAAAGGATTAGCTG
ATATGCTAAAACCTGCTCTTTCCCGTGGTGAATTGACACTGATTGGCGCCACAACTCAAGATGAATACCGCAATACCATT
TTAAAAAATGCTGCGCTTGCTCGTCGTTTTAATGAGGTTAAGGTAAATGCACCGTCTGCTGAGGACACCTTCCATATTTT
AATAGGAATCCGAAATCTTTACGAACAACACCATAATGTTATCCTTCCGGATGCTGTTCTTAAAGCTGCGATTGACTATT
CTATTCAGTACATTCCTCAACGTAGTTTACCAGATAAAGCGATTGACTTAGTAGATATGACTGCTGCGCATTTAGCTGCT
CAGCATCCAGTGACTGACCTCAAGTCTCTAGAAGCTGAAATGACCACTCAAAAGAATATCCAAGAAGAGGCTGTGGCTAA
GGAAGATTTTGAGAGAGCTTTAACCGCTAAAACTCGAATTGAAGAATTGCAAAAACAAATGGACAACCATAGCGAAGACC
AAAAGGTTACTGCTACTGTCAATGACATTGCAGAATCTGTAGAGCGCCTGACTGGTGTCCCAGTGTCCAATATGGGAGCT
AGTGATTTGGAAAGACTCAAAAAAATTAGCAACCGCTTAAAAGGACACGTGATTGGTCAAGATGGAGCTGTTGAAGCTGT
GGCTCGTGCTATTCGCCGTAATCGAGCTGGTTTTGATGATGGCAATCGTCCTATCGGTTCCTTCCTCTTTGTTGGACCAA
CAGGTGTCGGTAAGACAGAGTTAGCCAAACAGCTAGCACTGGACCTCTTTGGTTCCAAAGAGGCTATTATTCGACTTGAC
ATGTCCGAATACAGTGATCGTACCGCTGTGTCCAAGTTAATCGGGACAACTGCCGGTTATGTCGGTTATGATGATAATAA
CAATACGTTAACGGAACGAGTTCGTCGCAACCCGTATGCGATTGTTCTATTGGATGAGATTGAAAAAGCCGATCCGCAAG
TCATTACCCTTCTTCTCCAAGTACTGGATGATGGCCGATTAACAGATGGACAGGGAAATACCATCAACTTTAAAAACACT
GTTATCATTGCTACTTCTAATGCTGGATTTGGGCATCAAGAAGATGAAAATACTGATCAATCTGCTATTATGGACCGTAT
TGCGCCTTACTTTAGACCAGAATTTCTCAATCGTTTCAATGGGGTTATCGAATTCAATCATCTGCAAAAAGAAGACTTAG
AAGAAATTGTTGATTTAATGTTAGCGGAAGTTAATCAAACCATAGCTAAAAAAGGGATCAGCTTAGCTATCTCTGAGGAT
GCTAAAGCTCACTTGATTGAATTAGGTTATGACCACGCAATGGGAGTTCGACCATTACGCCGTGTCATCGAGCAAGAAAT
CCGAGACCGCATTACAGACTTTTACCTCGATCATCCAGAGGTCAAAAACCTACAAGCTAGTCTGGAACAAGGACAGTTAG
TCATTCACGACAAAAACTAA
ATGACAAATTATTATGACAAAGATCCTTTTGGAAACATGGATGATATCTTTAATCAACTAATGGGCAATATGGGTGGCTA
TCGCAGTGAAAATCGACGCTATTTAGTGAACGGACGCGAAATGACGCCTGAAGAATTCCAGGCATATCGTCAAACTGGAC
GTCTAAGCGATAAAGGTACTGAACAACCTACAGCCCAAGGTCATCAGACCAAAAAGGATGGGATTTTAGCTAAACTTGGC
ACCAACTTAACGGAAGAAGCAAGACAAGGAAAACTTGATCCTGTTATTGGTCGCAATCACGAAATTCAAGCCACTGCGGA
AATTTTAGCTCGCCGAACAAAGAATAATCCTGTTCTAGTCGGAGATGCCGGTGTTGGTAAAACAGCTGTGGTTGAAGGGC
TAGCTCAAGCTATTGTGAATGGTGACGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCCATTGATATTTCTGGCCTT
GAAGCAGGCACTCAGTACCGTGGCTCCTTTGAAGAAAATATCCAAAACATGATTCAAGAGGTTAAAGAAGCTGGGAATAT
TATTCTTTTCTTTGATGAAATTCATCAAATTCTTGGTGCAGGTTCCACTGGTGGTGACTCTGGGTCTAAAGGATTAGCTG
ATATGCTAAAACCTGCTCTTTCCCGTGGTGAATTGACACTGATTGGCGCCACAACTCAAGATGAATACCGCAATACCATT
TTAAAAAATGCTGCGCTTGCTCGTCGTTTTAATGAGGTTAAGGTAAATGCACCGTCTGCTGAGGACACCTTCCATATTTT
AATAGGAATCCGAAATCTTTACGAACAACACCATAATGTTATCCTTCCGGATGCTGTTCTTAAAGCTGCGATTGACTATT
CTATTCAGTACATTCCTCAACGTAGTTTACCAGATAAAGCGATTGACTTAGTAGATATGACTGCTGCGCATTTAGCTGCT
CAGCATCCAGTGACTGACCTCAAGTCTCTAGAAGCTGAAATGACCACTCAAAAGAATATCCAAGAAGAGGCTGTGGCTAA
GGAAGATTTTGAGAGAGCTTTAACCGCTAAAACTCGAATTGAAGAATTGCAAAAACAAATGGACAACCATAGCGAAGACC
AAAAGGTTACTGCTACTGTCAATGACATTGCAGAATCTGTAGAGCGCCTGACTGGTGTCCCAGTGTCCAATATGGGAGCT
AGTGATTTGGAAAGACTCAAAAAAATTAGCAACCGCTTAAAAGGACACGTGATTGGTCAAGATGGAGCTGTTGAAGCTGT
GGCTCGTGCTATTCGCCGTAATCGAGCTGGTTTTGATGATGGCAATCGTCCTATCGGTTCCTTCCTCTTTGTTGGACCAA
CAGGTGTCGGTAAGACAGAGTTAGCCAAACAGCTAGCACTGGACCTCTTTGGTTCCAAAGAGGCTATTATTCGACTTGAC
ATGTCCGAATACAGTGATCGTACCGCTGTGTCCAAGTTAATCGGGACAACTGCCGGTTATGTCGGTTATGATGATAATAA
CAATACGTTAACGGAACGAGTTCGTCGCAACCCGTATGCGATTGTTCTATTGGATGAGATTGAAAAAGCCGATCCGCAAG
TCATTACCCTTCTTCTCCAAGTACTGGATGATGGCCGATTAACAGATGGACAGGGAAATACCATCAACTTTAAAAACACT
GTTATCATTGCTACTTCTAATGCTGGATTTGGGCATCAAGAAGATGAAAATACTGATCAATCTGCTATTATGGACCGTAT
TGCGCCTTACTTTAGACCAGAATTTCTCAATCGTTTCAATGGGGTTATCGAATTCAATCATCTGCAAAAAGAAGACTTAG
AAGAAATTGTTGATTTAATGTTAGCGGAAGTTAATCAAACCATAGCTAAAAAAGGGATCAGCTTAGCTATCTCTGAGGAT
GCTAAAGCTCACTTGATTGAATTAGGTTATGACCACGCAATGGGAGTTCGACCATTACGCCGTGTCATCGAGCAAGAAAT
CCGAGACCGCATTACAGACTTTTACCTCGATCATCCAGAGGTCAAAAACCTACAAGCTAGTCTGGAACAAGGACAGTTAG
TCATTCACGACAAAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
47.673 |
100 |
0.484 |
| clpE | Streptococcus mutans UA159 |
46.393 |
100 |
0.469 |
| clpE | Streptococcus pneumoniae Rx1 |
45.755 |
99.428 |
0.455 |
| clpE | Streptococcus pneumoniae D39 |
45.755 |
99.428 |
0.455 |
| clpE | Streptococcus pneumoniae R6 |
45.755 |
99.428 |
0.455 |
| clpE | Streptococcus pneumoniae TIGR4 |
45.677 |
99.285 |
0.454 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
44.186 |
92.275 |
0.408 |
| clpC | Streptococcus pneumoniae Rx1 |
40.943 |
97.139 |
0.398 |
| clpC | Streptococcus pneumoniae D39 |
40.943 |
97.139 |
0.398 |
| clpC | Streptococcus pneumoniae TIGR4 |
40.795 |
97.139 |
0.396 |
| clpC | Streptococcus mutans UA159 |
43.065 |
88.698 |
0.382 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.065 |
88.698 |
0.382 |
| clpC | Streptococcus thermophilus LMD-9 |
43.065 |
88.698 |
0.382 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.326 |
88.555 |
0.375 |