Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM47_RS10200 Genome accession   NZ_LS483360
Coordinates   54249..54344 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10876     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49249..59344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS00320 (NCTC10876_00064) - 50113..51810 (+) 1698 WP_020904816.1 AIPR family protein -
  DQM47_RS00325 (NCTC10876_00065) purB 51828..53120 (+) 1293 WP_023079043.1 adenylosuccinate lyase -
  DQM47_RS00330 (NCTC10876_00066) comR 53254..54165 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  DQM47_RS10200 (NCTC10876_00067) comS 54249..54344 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQM47_RS00335 (NCTC10876_00068) ruvB 54391..55389 (+) 999 WP_014407198.1 Holliday junction branch migration DNA helicase RuvB -
  DQM47_RS00340 (NCTC10876_00069) - 55527..55964 (+) 438 WP_111695793.1 low molecular weight protein-tyrosine-phosphatase -
  DQM47_RS00345 (NCTC10876_00070) - 55987..56388 (+) 402 WP_032465955.1 MORN repeat-containing protein -
  DQM47_RS00350 (NCTC10876_00071) - 56385..58160 (+) 1776 WP_023610835.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1138494 DQM47_RS10200 WP_198462994.1 54249..54344(+) (comS) [Streptococcus pyogenes strain NCTC10876]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1138494 DQM47_RS10200 WP_198462994.1 54249..54344(+) (comS) [Streptococcus pyogenes strain NCTC10876]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment